View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk444-LTR4-TNT-insertion-11 (Length: 322)
Name: Tnk444-LTR4-TNT-insertion-11
Description: Tnk444-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk444-LTR4-TNT-insertion-11 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 311
Target Start/End: Complemental strand, 27536806 - 27536504
Alignment:
| Q |
9 |
caaccttctattattagcttaagctttctctctttgtaacagcactttaaactaatgtaaatctatataatagtgtacaacaatctatatattagggatt |
108 |
Q |
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|||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27536806 |
caaccttctattattagcttcagttttctctctctgtaacagcactttaaactcatgtaaatctatataatagtgtacaacaatctatatattagggatt |
27536707 |
T |
|
| Q |
109 |
cattattattgtctttttagcttaaaccagaatttacaactttcaaatgagattttgtagcagatgcttaatgtgtgtccatgagcctttgtaagccnnn |
208 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27536706 |
cattattattgtctttttaacttaaactagaatttacaactttcaaacgagcttttgtagcagatgcttaatgtgtgtccatgagcttttgtaagccttt |
27536607 |
T |
|
| Q |
209 |
nnnnggaactcttgacattgctgtatttatattctaatttatcaaacttgatagacttttaaatttcatttgaaagccttttcattaaccattactttag |
308 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27536606 |
ttttggaactcttgacattgttgtatttatattctaatttatcaaacttgatagacttttaaatttcacttgaaagccttttcattaaccattactttag |
27536507 |
T |
|
| Q |
309 |
caa |
311 |
Q |
| |
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||| |
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| T |
27536506 |
caa |
27536504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 15643331 - 15643035
Alignment:
| Q |
13 |
cttctattattagcttaagctttctctctttgtaacagcactttaaactaatgtaaatctatataatagtgtacaacaatctatatattagggattcatt |
112 |
Q |
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|||||||||||||||| || ||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15643331 |
cttctattattagcttcagttttctctctc---aacagcacttcaaactcatgtaaatctatataatagtgtacaacaatctatatattagggattcatt |
15643235 |
T |
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| Q |
113 |
attattgtcttttt-agcttaaaccagaatttacaactttcaaatgagattttgtagcagatgcttaatgtgtgtccatgagcctttgtaagccnnnnnn |
211 |
Q |
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| T |
15643234 |
attattgtcttttttagcttaaaccagaatttacaactttcaaacgagcttttgtagcagatgcttaatgtgtgcccatgagcttttgtaagcctttttt |
15643135 |
T |
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| Q |
212 |
nggaactcttgacattgctgtatttatattctaatttatcaaacttgatagacttttaaatttcatttgaaagccttttcattaaccattactttagcaa |
311 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15643134 |
tggaactcttgacgttgctgtatttatattctaatttatcaaactcgatagacttttaaatttcatttgaaagccttttcattaaccattactttagcaa |
15643035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 9 - 205
Target Start/End: Complemental strand, 15654641 - 15654443
Alignment:
| Q |
9 |
caaccttctattattagcttaagctttctctctttgta--acagcactttaaactaatgtaaatctatataatagtgtacaacaatctatatattaggga |
106 |
Q |
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|||||||||||| ||||||| || ||| ||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15654641 |
caaccttctatttttagcttcagttttgtctctctgtataacaacactttaaactcatgtaaatctatataatagtgtacaacaatctatatattaggga |
15654542 |
T |
|
| Q |
107 |
ttcattattattgtctttttagcttaaaccagaatttacaactttcaaatgagattttgtagcagatgcttaatgtgtgtccatgagcctttgtaagcc |
205 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
15654541 |
ttcattattattgtctttttaggttaaaccagaatttacaactttcaaatgagcttttgtagcatatgcttaatgtgtgtccatgagcttttgtaagcc |
15654443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 15654438 - 15654358
Alignment:
| Q |
234 |
tttatattctaatttatcaaacttgatagacttttaaatttcatttgaaagccttttcattaaccattactttagcaatta |
314 |
Q |
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| T |
15654438 |
tttattttctaatttatcaaacttgatagacttttaaatttcatttgaaagccttttcattaaccattactttagcaatta |
15654358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 47935415 - 47935511
Alignment:
| Q |
107 |
ttcattattattgtctttttagcttaaaccagaatttacaactttcaaatgagattttgtagcagatgcttaatgtgtgtccatgagcctttgtaag |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||||||| |||||||| |
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| T |
47935415 |
ttcattattattgtctttttagcttaaaccagaatttacaactttcaaacgagcttttgtggcagatggttaatgtgtgtccatgagcttttgtaag |
47935511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 4303345 - 4303301
Alignment:
| Q |
43 |
tgtaacagcactttaaactaatgtaaatctatataatagtgtaca |
87 |
Q |
| |
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||||||||||||||||| | |||||||||||||||||| |||||| |
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| T |
4303345 |
tgtaacagcactttaaaatcatgtaaatctatataataatgtaca |
4303301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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