View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk444-LTR4-TNT-insertion-12 (Length: 118)
Name: Tnk444-LTR4-TNT-insertion-12
Description: Tnk444-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk444-LTR4-TNT-insertion-12 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 9e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 9e-46
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 43278912 - 43279008
Alignment:
| Q |
9 |
ttagagacataggatggaaagttgggagatagtggtgtgtgaactgtttttacgggttaatgtatcaggggaagttgtgaaggattgattggcatca |
105 |
Q |
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| T |
43278912 |
ttagagacataggatggaaagttgggagatagtggtgtgtgaactgtttttacgggttaatgtatcaggggaagttgtgaaggattgatcggcatca |
43279008 |
T |
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