View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk444-LTR4-TNT-insertion-19 (Length: 356)
Name: Tnk444-LTR4-TNT-insertion-19
Description: Tnk444-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk444-LTR4-TNT-insertion-19 |
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Alignment Details
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 52519100 - 52519160
Alignment:
| Q |
195 |
tatttgtagatagggaaaacaaaaacattaatgagaataatggctacctatacatgcagac |
255 |
Q |
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| T |
52519100 |
tatttgtagatagggaaaacaaaaacattaatgagaataatggctacctatacatgcagac |
52519160 |
T |
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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 52518919 - 52518952
Alignment:
| Q |
9 |
atgccattcaaaacttaatatattcagcccttag |
42 |
Q |
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| T |
52518919 |
atgccattcacaacttaatatattcagcccttag |
52518952 |
T |
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