View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk444-LTR4-TNT-insertion-2 (Length: 289)
Name: Tnk444-LTR4-TNT-insertion-2
Description: Tnk444-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk444-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 29822492 - 29822221
Alignment:
| Q |
11 |
ctccatgtttcatccacaatcatcgtaccaattttatgttaagttcctcaagactcagttatggtcacactcacactctttactattctcaccaaagatc |
110 |
Q |
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| T |
29822492 |
ctccatgtttcatccacaatcatcgtaccaattttatgttcagttcctcaagactcagttatggtcacactcacactctttactattctcaccaaagatc |
29822393 |
T |
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| Q |
111 |
ttctgttcccactattgtttgttctgcttccaataaaccatctacttctcctcaaattaggtaccctttttctctcctatgaaaaacatatttggttatg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29822392 |
ttctgttcccactattgtttgttctgcttccaataaaccatctacttctcctcaaattaggtaccctttttctctcctatgaaaaacatatttggttatg |
29822293 |
T |
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| Q |
211 |
aggtgattttagaatgtttgtttcttaattttgatatgtatgtagcaacgatagttaggtagctcaattggt |
282 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
29822292 |
aggtgattttagaatgtttgtttcttaatttcgatatgtatgtagcaatgatagttaggtagctcaattggt |
29822221 |
T |
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