View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk444-LTR4-TNT-insertion-20 (Length: 69)
Name: Tnk444-LTR4-TNT-insertion-20
Description: Tnk444-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk444-LTR4-TNT-insertion-20 |
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| [»] scaffold0855 (1 HSPs) |
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| [»] scaffold0847 (1 HSPs) |
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Alignment Details
Target: scaffold0855 (Bit Score: 45; Significance: 2e-17; HSPs: 1)
Name: scaffold0855
Description:
Target: scaffold0855; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 1222 - 1170
Alignment:
| Q |
8 |
ataatttgttgagtacctttaaatgcaaaatttacacatccttgttacaattg |
60 |
Q |
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| T |
1222 |
ataatttgttgagtacctttaaatgcaaaatttacacatccttattacgattg |
1170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0847 (Bit Score: 45; Significance: 2e-17; HSPs: 1)
Name: scaffold0847
Description:
Target: scaffold0847; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 1387 - 1335
Alignment:
| Q |
8 |
ataatttgttgagtacctttaaatgcaaaatttacacatccttgttacaattg |
60 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
1387 |
ataatttgttgagtacctttaaatgcaaaatttacacatccttattacgattg |
1335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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