View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk444-LTR4-TNT-insertion-21 (Length: 339)
Name: Tnk444-LTR4-TNT-insertion-21
Description: Tnk444-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk444-LTR4-TNT-insertion-21 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 332
Target Start/End: Complemental strand, 43982246 - 43981920
Alignment:
| Q |
8 |
attatttctattctgtttttaggaatcatttacctttcttcaattatactatccctcacattatttctactctgtttatatttcaattctatttaggaat |
107 |
Q |
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| T |
43982246 |
attatttctattctgtttttaggaatcatttacctttcttcaattatactatccctcacattatttctactctgtttatatttcaattctatttaggaat |
43982147 |
T |
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| Q |
108 |
cctacctttcttcaattatactttcgctctgctaatttgtaaaatcaaagggattgtatccgagagc-actgcttggataaatagttaaatgtatagttc |
206 |
Q |
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| T |
43982146 |
cctacctttcttcaattatactttcgctctgctaatttgtaaaatcaaagggattgtatccgagagcaattgctcctacaaa-aaatatctgtacgcctc |
43982048 |
T |
|
| Q |
207 |
a--tagcattagcgtctaatttgattagtgtaaaagcggagttttgaagggcaacggtaaagttgttgttacgtgattgaaagggaaccacttacaatac |
304 |
Q |
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| T |
43982047 |
atttagcattagcgtctaatttgattagtgtaaaagcggagttttgaagggcaacggtaaagttgttgttacgtgattgaaagggaatcacttacaatac |
43981948 |
T |
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| Q |
305 |
agggtaagactgtgtaatacaccaattg |
332 |
Q |
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| T |
43981947 |
agggtaagactgtgtaatacaccaattg |
43981920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Complemental strand, 12257757 - 12257724
Alignment:
| Q |
255 |
gcaacggtaaagttgttgttacgtgattgaaagg |
288 |
Q |
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| T |
12257757 |
gcaacggtaaagttgttgtcacgtgattgaaagg |
12257724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 829606 - 829574
Alignment:
| Q |
255 |
gcaacggtaaagttgttgttacgtgattgaaag |
287 |
Q |
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| T |
829606 |
gcaacggtaaagttgttgtcacgtgattgaaag |
829574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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