View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk444-LTR4-TNT-insertion-3 (Length: 525)

Name: Tnk444-LTR4-TNT-insertion-3
Description: Tnk444-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk444-LTR4-TNT-insertion-3
Tnk444-LTR4-TNT-insertion-3
[»] chr7 (19 HSPs)
chr7 (8-462)||(8339877-8340330)
chr7 (211-285)||(8528498-8528573)
chr7 (458-515)||(43955514-43955571)
chr7 (459-515)||(40110735-40110791)
chr7 (461-515)||(5644782-5644836)
chr7 (458-515)||(2057392-2057449)
chr7 (458-515)||(31632719-31632776)
chr7 (466-515)||(43955619-43955668)
chr7 (461-515)||(6498770-6498824)
chr7 (317-461)||(18931940-18932076)
chr7 (461-515)||(26162142-26162196)
chr7 (461-515)||(28539173-28539227)
chr7 (457-515)||(40110843-40110901)
chr7 (458-515)||(5644674-5644731)
chr7 (461-510)||(34398959-34399008)
chr7 (458-515)||(35776960-35777017)
chr7 (459-515)||(25189231-25189287)
chr7 (459-515)||(29065817-29065873)
chr7 (459-515)||(30524253-30524309)
[»] chr5 (24 HSPs)
chr5 (457-515)||(40643922-40643980)
chr5 (466-515)||(3563282-3563331)
chr5 (458-515)||(40090430-40090487)
chr5 (459-515)||(15374065-15374121)
chr5 (461-515)||(26281285-26281339)
chr5 (457-515)||(34982212-34982269)
chr5 (466-515)||(2721576-2721625)
chr5 (459-512)||(23092070-23092123)
chr5 (466-515)||(28828372-28828421)
chr5 (459-515)||(2316376-2316432)
chr5 (456-515)||(22303886-22303945)
chr5 (461-515)||(9764443-9764497)
chr5 (461-515)||(15804322-15804376)
chr5 (461-515)||(22766952-22767006)
chr5 (461-515)||(37722910-37722964)
chr5 (458-515)||(927299-927356)
chr5 (458-515)||(6634012-6634069)
chr5 (458-515)||(9764335-9764392)
chr5 (466-515)||(15804399-15804448)
chr5 (466-515)||(20523238-20523287)
chr5 (458-515)||(25935306-25935363)
chr5 (466-515)||(32389977-32390026)
chr5 (459-515)||(32250114-32250169)
chr5 (457-509)||(33245394-33245446)
[»] chr4 (17 HSPs)
chr4 (457-515)||(1112601-1112659)
chr4 (236-285)||(973490-973539)
chr4 (458-515)||(15660180-15660237)
chr4 (457-515)||(7352917-7352975)
chr4 (461-515)||(49111417-49111471)
chr4 (456-515)||(15660288-15660347)
chr4 (461-515)||(857344-857398)
chr4 (461-515)||(4896648-4896702)
chr4 (461-515)||(14982280-14982334)
chr4 (461-515)||(16516171-16516225)
chr4 (461-515)||(31473849-31473903)
chr4 (461-515)||(36455907-36455961)
chr4 (466-515)||(4441342-4441391)
chr4 (466-515)||(7352817-7352866)
chr4 (466-515)||(10127979-10128028)
chr4 (466-515)||(10633037-10633086)
chr4 (459-515)||(52493924-52493978)
[»] chr3 (17 HSPs)
chr3 (457-515)||(49457339-49457397)
chr3 (460-515)||(5415782-5415837)
chr3 (340-461)||(33718657-33718770)
chr3 (457-515)||(27251999-27252057)
chr3 (457-515)||(42005971-42006029)
chr3 (457-515)||(44436254-44436312)
chr3 (457-515)||(44692927-44692985)
chr3 (461-515)||(46672821-46672875)
chr3 (458-515)||(671637-671694)
chr3 (459-515)||(9129449-9129505)
chr3 (459-515)||(9137556-9137612)
chr3 (467-515)||(28092220-28092268)
chr3 (456-515)||(44692817-44692876)
chr3 (457-515)||(35279920-35279978)
chr3 (461-515)||(36398007-36398061)
chr3 (461-515)||(47767432-47767486)
chr3 (466-515)||(21307550-21307599)
[»] chr8 (14 HSPs)
chr8 (459-515)||(42711385-42711441)
chr8 (317-461)||(18848859-18848995)
chr8 (461-515)||(37268112-37268166)
chr8 (458-515)||(17110866-17110923)
chr8 (458-515)||(33986001-33986058)
chr8 (471-515)||(13404932-13404976)
chr8 (459-515)||(14991690-14991746)
chr8 (461-515)||(3853616-3853670)
chr8 (461-515)||(3858074-3858128)
chr8 (457-515)||(33377326-33377384)
chr8 (461-515)||(33902667-33902721)
chr8 (457-515)||(40046800-40046858)
chr8 (467-515)||(8689138-8689186)
chr8 (455-515)||(36103095-36103155)
[»] chr6 (7 HSPs)
chr6 (455-515)||(9285641-9285701)
chr6 (457-515)||(6919812-6919870)
chr6 (451-515)||(776185-776249)
chr6 (457-515)||(8574770-8574828)
chr6 (461-515)||(29889453-29889507)
chr6 (461-515)||(34244999-34245053)
chr6 (459-515)||(9763117-9763173)
[»] chr2 (10 HSPs)
chr2 (459-515)||(14365698-14365754)
chr2 (461-515)||(41461620-41461674)
chr2 (466-515)||(11684604-11684653)
chr2 (459-515)||(17180295-17180351)
chr2 (459-515)||(27033488-27033544)
chr2 (460-515)||(14537198-14537253)
chr2 (461-515)||(784898-784952)
chr2 (469-515)||(11716504-11716550)
chr2 (461-515)||(14365804-14365858)
chr2 (458-515)||(10480116-10480173)
[»] chr1 (21 HSPs)
chr1 (459-515)||(23536065-23536121)
chr1 (457-516)||(8224764-8224823)
chr1 (456-515)||(15034764-15034823)
chr1 (457-515)||(29446746-29446804)
chr1 (461-515)||(34756427-34756481)
chr1 (459-515)||(4038073-4038129)
chr1 (459-515)||(15034657-15034713)
chr1 (459-515)||(26501098-26501154)
chr1 (455-515)||(30190241-30190301)
chr1 (457-509)||(43623003-43623055)
chr1 (460-515)||(32287952-32288007)
chr1 (461-515)||(24273239-24273293)
chr1 (461-515)||(47165231-47165285)
chr1 (317-461)||(52683678-52683814)
chr1 (318-462)||(52977839-52977974)
chr1 (466-515)||(27804270-27804319)
chr1 (466-515)||(40264135-40264184)
chr1 (458-515)||(44410416-44410473)
chr1 (466-515)||(45565399-45565448)
chr1 (459-515)||(27804370-27804426)
chr1 (458-490)||(37447385-37447417)
[»] scaffold1562 (1 HSPs)
scaffold1562 (466-515)||(510-559)
[»] scaffold1158 (1 HSPs)
scaffold1158 (466-515)||(2034-2083)
[»] scaffold0009 (1 HSPs)
scaffold0009 (459-515)||(42083-42139)
[»] scaffold0169 (1 HSPs)
scaffold0169 (456-515)||(4070-4129)
[»] scaffold0048 (1 HSPs)
scaffold0048 (466-515)||(82948-82997)


Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 8 - 462
Target Start/End: Complemental strand, 8340330 - 8339877
Alignment:
Q  8 gttgagaacttgtaaattggacatccaaattgcaatttgagagttatgaatacttttatttcaaatttcgatatagatgtctgtttacaacttccgccac 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8340330 gttgagaacttgtaaattggacatccaaattgcaatttgagagttatgaatacttttatttcaaatttcgatatggatgtctgtttacaacttccgccac 8340231  T
Q  108 ctctcaaattttaaaggcaaagttattttcttcacaacannnnnnnaacccctctcattaggggaaggccatttaaggttcatgttcctgatttaggtat 207  Q
    ||||||||||||||||| | |||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8340230 ctctcaaattttaaaggaagagttattttcttcacaacatttttttaacccctctcattgggggaaggccatttaaggttcatgttcctgatttaggtat 8340131  T
Q  208 taggttagatattgttttgatgcttgcctttagttgtgttgaacaagattgtatttcagatgtataaatgagattgatagctgcattcattgcatttgat 307  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8340130 taggttagatattgttttgatgcttgcctt-agttgtgttgaacaagattgtatttcagatgtataaatgagattgatagctgcattcattgcatttgat 8340032  T
Q  308 ttgattgtatcacatagttctcggctgtttgcacctaaagaaaatgtcggggataatgtaagtgaatctactccttttatgatgagcgaggatgtcacat 407  Q
    |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8340031 ttgattatatcacatagttctaggttgtttgcacctaaagaaaatgtcggggataatgtaagtgaatctactccttttatgatgagcgaggatgtcacag 8339932  T
Q  408 aatcaaatcattggcaacaaaccaaaattctaacaatgattcttcggaacctaag 462  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8339931 aatcaaatcattggcaacaaatcaaaattctaacaatgattcttcggaacctaag 8339877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 8528573 - 8528498
Alignment:
Q  211 gttagatatt-gttttgatgcttgcctttagttgtgttgaacaagattgtatttcagatgtataaatgagattgat 285  Q
    |||||||||| | ||| |||||||| |||||||||| ||||||||||||||||||||||||| | || ||||||||    
T  8528573 gttagatatttgcttttatgcttgcttttagttgtgctgaacaagattgtatttcagatgtacagataagattgat 8528498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 458 - 515
Target Start/End: Original strand, 43955514 - 43955571
Alignment:
Q  458 ctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||| |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  43955514 ctaagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 43955571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 40110735 - 40110791
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  40110735 taagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 40110791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 5644836 - 5644782
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  5644836 agagtgtgtttggatgggggaacgttttgaggtaatgtaatgttttgagggaatt 5644782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 458 - 515
Target Start/End: Original strand, 2057392 - 2057449
Alignment:
Q  458 ctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||| |||||||||| |||||| |||||||   ||||||||||||||||||||||    
T  2057392 ctaagagtgtgtttggatgggggaatgttttgagcgaatgtaatgttttgagggaatt 2057449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 458 - 515
Target Start/End: Original strand, 31632719 - 31632776
Alignment:
Q  458 ctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||| |||||||||| |||||| ||||||| | ||||||||||| ||||||||||    
T  31632719 ctaagagtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaatt 31632776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 515
Target Start/End: Complemental strand, 43955668 - 43955619
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  43955668 gtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 43955619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 6498824 - 6498770
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| | |||| ||||||| | ||||||||||||||||||||||    
T  6498824 agagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaatt 6498770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 461
Target Start/End: Original strand, 18931940 - 18932076
Alignment:
Q  317 tcacatagttctcggctgtttgcacctaaagaaaatgtcggggataatgtaagtgaatctactccttttatgatgagcgaggatgtcacataatcaaatc 416  Q
    |||||||||||| |||  |||| | |||||||||||| |   |||||||||||||||  ||||||||  ||||   | ||||||||||||     ||||     
T  18931940 tcacatagttctaggccatttgtatctaaagaaaatgccccagataatgtaagtgaacatactccttccatga---gtgaggatgtcaca-----aaatt 18932031  T
Q  417 attggcaacaaaccaaaattctaacaatgattcttcggaacctaa 461  Q
    | | |||||||||||||||||||| ||||| |||| |||||||||    
T  18932032 agttgcaacaaaccaaaattctaataatgactctttggaacctaa 18932076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 26162196 - 26162142
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| ||||||| | ||||||||||| ||||||||||    
T  26162196 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaatt 26162142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 28539227 - 28539173
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| ||||||| | |||||| |||||||||||||||    
T  28539227 agagtgtgtttggatgggggaatgttttgagggaatgtattgttttgagggaatt 28539173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 515
Target Start/End: Complemental strand, 40110901 - 40110843
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||| |||||||||| ||| || |||| || | ||||||||||||||||||||||    
T  40110901 cctaagagtgtgtttggatggggaaatgtttcgagggaatgtaatgttttgagggaatt 40110843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 515
Target Start/End: Original strand, 5644674 - 5644731
Alignment:
Q  458 ctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||| ||||||| || | |||| ||||||| | ||||||||||||||||||||||    
T  5644674 ctaagagtgtgtttgaatggaggaatgttttgagggaatgtaatgttttgagggaatt 5644731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 510
Target Start/End: Complemental strand, 34399008 - 34398959
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagg 510  Q
    |||| |||||||||| |||||| ||||||| | |||||||||||||||||    
T  34399008 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagg 34398959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 515
Target Start/End: Complemental strand, 35777017 - 35776960
Alignment:
Q  458 ctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||| ||||||||||  ||||| ||||||| | ||||||||||| ||||||||||    
T  35777017 ctaagagtgtgtttggatgagggaatgttttgagggaatgtaatgttatgagggaatt 35776960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 515
Target Start/End: Complemental strand, 25189287 - 25189231
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| ||||||||||  ||||| ||||||| | |||| |||||||||||||||||    
T  25189287 taagagtgtgtttggatgtgggaatgttttgaggtaatgcaatgttttgagggaatt 25189231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 29065817 - 29065873
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| |||||||||| |  ||| ||||||| | ||||||||||||||||||||||    
T  29065817 taagagtgtgtttggatggatgaatgttttgagggaatgtaatgttttgagggaatt 29065873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 30524253 - 30524309
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| |||| ||||| | | || ||||||||| ||||||||||||||||||||||    
T  30524253 taagagtgtgtatggatggagtaatgttttgaaggaatgtaatgttttgagggaatt 30524309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 457 - 515
Target Start/End: Complemental strand, 40643980 - 40643922
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||| |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  40643980 cctaagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 40643922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 3563282 - 3563331
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||||||||||||| ||||||| | ||||||||||||||||||||||    
T  3563282 gtgtttggataggggaatgttttgagggaatgtaatgttttgagggaatt 3563331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 458 - 515
Target Start/End: Complemental strand, 40090487 - 40090430
Alignment:
Q  458 ctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||| |||||||||| |||||| ||||||| ||||||||||||||||| ||||||    
T  40090487 ctaagagtgtgtttggatgggggaatgttttgaggaaatgtaatgttttgatggaatt 40090430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 515
Target Start/End: Complemental strand, 15374121 - 15374065
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  15374121 taagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 15374065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 26281339 - 26281285
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  26281339 agagtgtgtttggatgggggaacgttttgagggaatgtaatgttttgagggaatt 26281285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 515
Target Start/End: Original strand, 34982212 - 34982269
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||| ||||||||||||||||| ||||||| | ||||| ||||||||||||||||    
T  34982212 cctaagagtgtgtttggataggggaatgttttgagggaatgt-atgttttgagggaatt 34982269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 515
Target Start/End: Complemental strand, 2721625 - 2721576
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  2721625 gtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 2721576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 459 - 512
Target Start/End: Complemental strand, 23092123 - 23092070
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgaggga 512  Q
    |||||| |||||||||| |||||| ||||||||  |||||||||||||||||||    
T  23092123 taagagtgtgtttggatgggggaatgttttgaacgaatgtaatgttttgaggga 23092070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 28828372 - 28828421
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  28828372 gtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 28828421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 2316376 - 2316432
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| |||||||||| |||||| ||||||| | |||||||| |||||||||||||    
T  2316376 taagagtgtgtttggatgggggaatgttttgagggaatgtaatattttgagggaatt 2316432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 515
Target Start/End: Complemental strand, 22303945 - 22303886
Alignment:
Q  456 acctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||| |||||||||| |||||| ||||||| | ||||||||||||||| ||||||    
T  22303945 accttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaaggaatt 22303886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 9764497 - 9764443
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| |||| || | ||||||||||||||||||||||    
T  9764497 agagtgtgtttggatgggggaatgtttcgagggaatgtaatgttttgagggaatt 9764443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Original strand, 15804322 - 15804376
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| ||||||| | |||||| |||||||||||||||    
T  15804322 agagtgtgtttggatgggggaatgttttgagggaatgtagtgttttgagggaatt 15804376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Original strand, 22766952 - 22767006
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| ||||||| | ||| ||||||||||||||||||    
T  22766952 agagtgtgtttggatgggggaatgttttgagggaatataatgttttgagggaatt 22767006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 37722964 - 37722910
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| ||||||  |||||| | ||||||||||||||||||||||    
T  37722964 agagtgtgtttggatgggggaatattttgagggaatgtaatgttttgagggaatt 37722910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 515
Target Start/End: Original strand, 927299 - 927356
Alignment:
Q  458 ctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||| |||||||||| ||| || ||||||| | |||||| |||||||||||||||    
T  927299 ctaagagtgtgtttggatggggaaatgttttgagggaatgtattgttttgagggaatt 927356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 515
Target Start/End: Original strand, 6634012 - 6634069
Alignment:
Q  458 ctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||| |||||||||| |||| |  |||||| | ||||||||||||||||||||||    
T  6634012 ctaagagtgtgtttggatggggggatattttgaggtaatgtaatgttttgagggaatt 6634069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 515
Target Start/End: Original strand, 9764335 - 9764392
Alignment:
Q  458 ctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||| |||||||||| ||||||  |||||| | || |||||||||||||||||||    
T  9764335 ctaagagtgtgtttggatgggggaatattttgagggaaagtaatgttttgagggaatt 9764392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 515
Target Start/End: Complemental strand, 15804448 - 15804399
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||| ||| || ||||||| | ||||||||||||||||||||||    
T  15804448 gtgtttggatggggaaatgttttgagggaatgtaatgttttgagggaatt 15804399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 515
Target Start/End: Complemental strand, 20523287 - 20523238
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||| |||||| |||||||   ||||||||||||||||||||||    
T  20523287 gtgtttggatgggggaatgttttgagagaatgtaatgttttgagggaatt 20523238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 515
Target Start/End: Complemental strand, 25935363 - 25935306
Alignment:
Q  458 ctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||| |||||||||| |||||| ||||||| | ||||||||||| ||||| ||||    
T  25935363 ctaagagtgtgtttggatgggggaatgttttgagggaatgtaatgttatgaggaaatt 25935306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 32389977 - 32390026
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||||||  ||||| ||||||||| |||||||| |||||||||||||    
T  32389977 gtgtttggatgagggaatgttttgaaggaatgtaatattttgagggaatt 32390026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 515
Target Start/End: Complemental strand, 32250169 - 32250114
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| |||||||||| |||||| ||||||| | || |||||||||||||||||||    
T  32250169 taagagtgtgtttggat-ggggaatgttttgagggaaagtaatgttttgagggaatt 32250114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 457 - 509
Target Start/End: Complemental strand, 33245446 - 33245394
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgag 509  Q
    |||| ||| |||||||||| |||||| ||||||| | ||||||||||||||||    
T  33245446 cctatgagtgtgtttggatgggggaatgttttgatggaatgtaatgttttgag 33245394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 457 - 515
Target Start/End: Original strand, 1112601 - 1112659
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||| |||||||||| |||||| ||||||| |||||||||||||| |||||||||    
T  1112601 cctaagagtgtgtttggatgggggaatgttttgaggaaatgtaatgtttcgagggaatt 1112659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 973539 - 973490
Alignment:
Q  236 tttagttgtgttgaacaagattgtatttcagatgtataaatgagattgat 285  Q
    |||||||||| ||||||||||||||||||||||||| | |||||||||||    
T  973539 tttagttgtgctgaacaagattgtatttcagatgtacagatgagattgat 973490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 458 - 515
Target Start/End: Original strand, 15660180 - 15660237
Alignment:
Q  458 ctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||| |||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  15660180 ctaagagtgtgtttggataggggaatattttgaggtaatgtaatgttttgagggaatt 15660237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 515
Target Start/End: Complemental strand, 7352975 - 7352917
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||| |||||||||| ||| || ||||||| | ||||||||||||||||||||||    
T  7352975 cctaagagtgtgtttggatggggaaatgttttgagggaatgtaatgttttgagggaatt 7352917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 49111471 - 49111417
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  49111471 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 49111417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 515
Target Start/End: Complemental strand, 15660347 - 15660288
Alignment:
Q  456 acctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||| ||||||||||  ||||| ||||||| | ||||||||||||||||||||||    
T  15660347 accttagagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaatt 15660288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 857398 - 857344
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| ||| || ||||||| | ||||||||||||||||||||||    
T  857398 agagtgtgtttggatggggaaatgttttgagggaatgtaatgttttgagggaatt 857344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Original strand, 4896648 - 4896702
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| ||||||  |||||| | ||||||||||||||||||||||    
T  4896648 agagtgtgtttggatgggggaatattttgaggtaatgtaatgttttgagggaatt 4896702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Original strand, 14982280 - 14982334
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| | |||| ||||||| | ||||||||||||||||||||||    
T  14982280 agagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaatt 14982334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Original strand, 16516171 - 16516225
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| ||||||| | ||||||||||||||| ||||||    
T  16516171 agagtgtgtttggatgggggaatgttttgacggaatgtaatgttttgaaggaatt 16516225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Original strand, 31473849 - 31473903
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| ||||||| | ||||||||||| ||||||||||    
T  31473849 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaatt 31473903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Original strand, 36455907 - 36455961
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| ||||||| | ||| ||||||||||||||||||    
T  36455907 agagtgtgtttggatgggggaatgttttgagggaatctaatgttttgagggaatt 36455961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 4441342 - 4441391
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||| | |||| ||||||| | ||||||||||||||||||||||    
T  4441342 gtgtttggatggtggaatgttttgagggaatgtaatgttttgagggaatt 4441391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 7352817 - 7352866
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||| |||||| ||||||| | ||||||||||||||| ||||||    
T  7352817 gtgtttggatgggggaatgttttgagggaatgtaatgttttgatggaatt 7352866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 10127979 - 10128028
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||| ||||||  |||||||| ||||||||||||||| ||||||    
T  10127979 gtgtttggatgggggaatattttgaagtaatgtaatgttttgaaggaatt 10128028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 10633037 - 10633086
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||| |||||| ||||||| | ||||||||||| ||||||||||    
T  10633037 gtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaatt 10633086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 52493924 - 52493978
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| |||||||||| |||||| ||||||||| ||||||||| ||||||||||||    
T  52493924 taagagtgtgtttggat-ggggaatgttttgaagtaatgtaatg-tttgagggaatt 52493978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 457 - 515
Target Start/End: Original strand, 49457339 - 49457397
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||| |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  49457339 cctaagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 49457397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 515
Target Start/End: Original strand, 5415782 - 5415837
Alignment:
Q  460 aagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||| |||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  5415782 aagagtgtgtttggataggggaatattttgagggaatgtaatgttttgagggaatt 5415837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 461
Target Start/End: Original strand, 33718657 - 33718770
Alignment:
Q  340 acctaaagaaaatgtcggggataatgtaagtgaatctactccttttatgatgagcgaggatgtcacataatcaaatcattggcaacaaaccaaaattcta 439  Q
    ||||| |||||||| |  ||||||||||| |||| |||||||||  ||||   | ||||||||||||     ||||||  ||||||||||||||||||||    
T  33718657 acctatagaaaatgccccggataatgtaaatgaacctactccttccatga---gtgaggatgtcaca-----aaatcaggggcaacaaaccaaaattcta 33718748  T
Q  440 acaatgattcttcggaacctaa 461  Q
    | |||||||||| |||||||||    
T  33718749 ataatgattctttggaacctaa 33718770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 515
Target Start/End: Complemental strand, 27252057 - 27251999
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||| |||||||||| |||| | ||||||| | ||||||||||||||||||||||    
T  27252057 cctaagagtgtgtttggatggggggatgttttgagggaatgtaatgttttgagggaatt 27251999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 515
Target Start/End: Complemental strand, 42006029 - 42005971
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||| |||||||||| |||||| ||||||| | ||||||||||||||| ||||||    
T  42006029 cctaagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaaggaatt 42005971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 515
Target Start/End: Original strand, 44436254 - 44436312
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||| |||||||||| |||||| ||||||| | ||||||||||||||||| ||||    
T  44436254 cctaagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggaaatt 44436312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 515
Target Start/End: Complemental strand, 44692985 - 44692927
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||| |||||||||| | |||| ||||||| | ||||||||||||||||||||||    
T  44692985 cctaagagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaatt 44692927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 46672875 - 46672821
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  46672875 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 46672821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 458 - 515
Target Start/End: Complemental strand, 671694 - 671637
Alignment:
Q  458 ctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||| || |||||||||||||| ||||||| | |||||| |||||||||||||||    
T  671694 ctaagagtgtttttggataggggaatgttttgagggaatgtattgttttgagggaatt 671637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 515
Target Start/End: Complemental strand, 9129505 - 9129449
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| ||||||||||  ||||| ||||||| | ||||||||||||||||||||||    
T  9129505 taagagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaatt 9129449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 515
Target Start/End: Complemental strand, 9137612 - 9137556
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| ||||||||||  ||||| ||||||| | ||||||||||||||||||||||    
T  9137612 taagagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaatt 9137556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 515
Target Start/End: Original strand, 28092220 - 28092268
Alignment:
Q  467 tgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||||| |||||| ||||||| ||||||| ||||||||||||||||    
T  28092220 tgtttggatgggggaatgttttgaggaaatgtgatgttttgagggaatt 28092268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 515
Target Start/End: Original strand, 44692817 - 44692876
Alignment:
Q  456 acctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||| |||||||||| |||||| ||||||| | || |||||||||||||||||||    
T  44692817 accttagagtgtgtttggatgggggaatgttttgagggaaagtaatgttttgagggaatt 44692876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 515
Target Start/End: Complemental strand, 35279978 - 35279920
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||  |||||||||| |||||| ||||||| | |||||||||||||||| |||||    
T  35279978 cctaagaatgtgtttggatgggggaatgttttgagggaatgtaatgttttgagtgaatt 35279920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 36398061 - 36398007
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| ||||||| | |||||| |||||||||||||||    
T  36398061 agagtgtgtttggatgggggaatgttttgagggaatgtattgttttgagggaatt 36398007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Original strand, 47767432 - 47767486
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| ||||||| | ||||||||||||||| ||||||    
T  47767432 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaaggaatt 47767486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 515
Target Start/End: Complemental strand, 21307599 - 21307550
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||| |||||| ||||||  | ||||||||||||||||||||||    
T  21307599 gtgtttggatgggggaatgttttgcgggaatgtaatgttttgagggaatt 21307550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 515
Target Start/End: Complemental strand, 42711441 - 42711385
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  42711441 taagagtgtgtttggattggggaatgttttgagggaatgtaatgttttgagggaatt 42711385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 461
Target Start/End: Complemental strand, 18848995 - 18848859
Alignment:
Q  317 tcacatagttctcggctgtttgcacctaaagaaaatgtcggggataatgtaagtgaatctactccttttatgatgagcgaggatgtcacataatcaaatc 416  Q
    |||||||||||| |||  ||||||||||||||||||| |   ||||||||||||||| ||| |||||  ||||   | |||||| ||| | |||||        
T  18848995 tcacatagttctaggccatttgcacctaaagaaaatgccccagataatgtaagtgaacctagtccttccatga---gtgaggatatcatagaatca---- 18848903  T
Q  417 attggcaacaaaccaaaattctaacaatgattcttcggaacctaa 461  Q
     | ||||||||||||||||||||| ||||| |||| |||||||||    
T  18848902 -tgggcaacaaaccaaaattctaataatgactctttggaacctaa 18848859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 37268166 - 37268112
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  37268166 agagtgtgtttggataggggaatattttgaggtaatgtaatgttttgagggaatt 37268112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 458 - 515
Target Start/End: Original strand, 17110866 - 17110923
Alignment:
Q  458 ctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||| |||||||||| ||| || ||||||| | ||||||||||||||||||||||    
T  17110866 ctaagagtgtgtttggatggggaaatgttttgagggaatgtaatgttttgagggaatt 17110923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 458 - 515
Target Start/End: Original strand, 33986001 - 33986058
Alignment:
Q  458 ctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||| |||||||||| |||||| || |||||| |||||||||||||||| |||||    
T  33986001 ctaagagtgtgtttggatgggggaatgtcttgaagtaatgtaatgttttgagagaatt 33986058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 515
Target Start/End: Complemental strand, 13404976 - 13404932
Alignment:
Q  471 tggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||||| ||||||| | ||||||||||||||||||||||    
T  13404976 tggataggggaatgttttgagggaatgtaatgttttgagggaatt 13404932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 14991690 - 14991746
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| |||||||||| |||||| ||||||| | ||||||||||||||||| ||||    
T  14991690 taagagtgtgtttggatgggggaatgttttgaggtaatgtaatgttttgaggcaatt 14991746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Original strand, 3853616 - 3853670
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| ||||||| | ||||||||||||||||| ||||    
T  3853616 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggaaatt 3853670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Original strand, 3858074 - 3858128
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| ||||||| | ||||||||||||||||| ||||    
T  3858074 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggaaatt 3858128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 515
Target Start/End: Complemental strand, 33377384 - 33377326
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||| |||||||||| |||||| ||||||| | ||| || |||||||||||||||    
T  33377384 cctaagagtgtgtttggatgggggaatgttttgagggaatatattgttttgagggaatt 33377326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Original strand, 33902667 - 33902721
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| | |||| ||||||| | ||||||||||||||||||||||    
T  33902667 agagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaatt 33902721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 515
Target Start/End: Original strand, 40046800 - 40046858
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||| |||||||||| |  ||| ||||||| | ||||||||||||||||||||||    
T  40046800 cctaagagtgtgtttggatggatgaatgttttgagggaatgtaatgttttgagggaatt 40046858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 515
Target Start/End: Original strand, 8689138 - 8689186
Alignment:
Q  467 tgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||||| | | || ||||||||| ||||||||||||||||||||||    
T  8689138 tgtttggatggagaaatgttttgaaggaatgtaatgttttgagggaatt 8689186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 515
Target Start/End: Original strand, 36103095 - 36103155
Alignment:
Q  455 aacctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||| |||||||||| | |||| ||||||| | ||||||||||||| ||| ||||    
T  36103095 aacctaagagtgtgtttggatggaggaatgttttgagggaatgtaatgttttaaggaaatt 36103155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 455 - 515
Target Start/End: Original strand, 9285641 - 9285701
Alignment:
Q  455 aacctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||| |||| |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  9285641 aaccttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 9285701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 515
Target Start/End: Complemental strand, 6919870 - 6919812
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||| |||||||||| |||||| ||||||| | || |||||||||||||||||||    
T  6919870 cctaagagtgtgtttggatgggggaatgttttgagggaaagtaatgttttgagggaatt 6919812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 515
Target Start/End: Complemental strand, 776249 - 776185
Alignment:
Q  451 tcggaacctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| ||||||| |||||||||||||  || ||||||| | ||||||||||||||||| ||||    
T  776249 tcggaaactaagagtgtgtttggataggaaaatgttttgagggaatgtaatgttttgaggaaatt 776185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 515
Target Start/End: Complemental strand, 8574828 - 8574770
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||| |||||||||| ||| || |||||||   ||||||||||||||||||||||    
T  8574828 cctaagagtgtgtttggatggggaaatgttttgagtgaatgtaatgttttgagggaatt 8574770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 29889507 - 29889453
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| | |||| ||||||| | ||||||||||||||||||||||    
T  29889507 agagtgtgtttggatggaggaatgttttgatggaatgtaatgttttgagggaatt 29889453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 34245053 - 34244999
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| | |||| ||||||| | ||||||||||||||||||||||    
T  34245053 agagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaatt 34244999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 515
Target Start/End: Complemental strand, 9763173 - 9763117
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| |||||||||| | ||||  |||||| | ||||||||||||||||||||||    
T  9763173 taagagtgtgtttggatggaggaatattttgaggtaatgtaatgttttgagggaatt 9763117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 14365698 - 14365754
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  14365698 taagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 14365754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 41461674 - 41461620
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  41461674 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 41461620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 11684604 - 11684653
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  11684604 gtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 11684653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 17180295 - 17180351
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| ||||||||||  ||||| ||||||| | ||||||||||||||||||||||    
T  17180295 taagagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaatt 17180351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 27033488 - 27033544
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| |||||||||| |||||| |||||||   ||||||||||||||||||||||    
T  27033488 taagagtgtgtttggatgggggaatgttttgagagaatgtaatgttttgagggaatt 27033544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 515
Target Start/End: Original strand, 14537198 - 14537253
Alignment:
Q  460 aagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||| |||||||||| |||||| ||||||| | ||||||||||||||||| ||||    
T  14537198 aagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggtaatt 14537253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 784952 - 784898
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| ||||||  |||||| | ||||||||||||||||||||||    
T  784952 agagtgtgtttggatgggggaatattttgatggaatgtaatgttttgagggaatt 784898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 515
Target Start/End: Complemental strand, 11716550 - 11716504
Alignment:
Q  469 tttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  11716550 tttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 11716504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 14365858 - 14365804
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| | |||| ||||||| | ||||||||||||||||||||||    
T  14365858 agagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaatt 14365804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 515
Target Start/End: Original strand, 10480116 - 10480173
Alignment:
Q  458 ctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||| |||||||||| |||||| ||||||| | |||||||||||  |||||||||    
T  10480116 ctaagagtgtgtttggatgggggaatgttttgagggaatgtaatgttacgagggaatt 10480173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 23536065 - 23536121
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  23536065 taagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 23536121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 457 - 516
Target Start/End: Original strand, 8224764 - 8224823
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaattg 516  Q
    |||||||| ||||||||||  ||||| ||||||| | |||||||||||||||||||||||    
T  8224764 cctaagagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaattg 8224823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 456 - 515
Target Start/End: Complemental strand, 15034823 - 15034764
Alignment:
Q  456 acctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||| |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  15034823 accttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 15034764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 515
Target Start/End: Original strand, 29446746 - 29446804
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||| ||||||| |  |||||| ||||||||| ||||||||||||||||||||||    
T  29446746 cctaagagtgtgtttgaacgggggaatgttttgaaggaatgtaatgttttgagggaatt 29446804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 515
Target Start/End: Original strand, 34756427 - 34756481
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  34756427 agagagtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 34756481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 4038073 - 4038129
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| |||||||| | |||||| ||||||| | ||||||||||||||||||||||    
T  4038073 taagagtgtgtttgggtgggggaatgttttgagggaatgtaatgttttgagggaatt 4038129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 15034657 - 15034713
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| |||||||||| | |||| ||||||| | ||||||||||||||||||||||    
T  15034657 taagagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaatt 15034713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 515
Target Start/End: Complemental strand, 26501154 - 26501098
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| |||||||||| | |||| ||||||| | ||||||||||||||||||||||    
T  26501154 taagagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaatt 26501098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 515
Target Start/End: Complemental strand, 30190301 - 30190241
Alignment:
Q  455 aacctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||| |||| |||||||||| |||||| ||||||| | ||||||||||||||||| ||||    
T  30190301 aaccttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggtaatt 30190241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 509
Target Start/End: Complemental strand, 43623055 - 43623003
Alignment:
Q  457 cctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgag 509  Q
    |||||||| |||||||||| |||||| ||||||| | ||||||||||||||||    
T  43623055 cctaagagtgtgtttggatgggggaatgttttgatggaatgtaatgttttgag 43623003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 515
Target Start/End: Complemental strand, 32288007 - 32287952
Alignment:
Q  460 aagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||| |||||||||| | |||||||||||| | ||||||||||||||||| ||||    
T  32288007 aagagtgtgtttggatggaggaaagttttgagggaatgtaatgttttgaggaaatt 32287952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 24273293 - 24273239
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| |||||| ||||||| | ||||||||||| ||||||||||    
T  24273293 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaatt 24273239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 47165285 - 47165231
Alignment:
Q  461 agagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||| |||||||||| | | || ||||||| ||||||||||||||||||||||||    
T  47165285 agagtgtgtttggatggagaaatgttttgaggaaatgtaatgttttgagggaatt 47165231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 461
Target Start/End: Complemental strand, 52683814 - 52683678
Alignment:
Q  317 tcacatagttctcggctgtttgcacctaaagaaaatgtcggggataatgtaagtgaatctactccttttatgatgagcgaggatgtcacataatcaaatc 416  Q
    |||||||||||| |||  | || ||||| |||||||| |   |||||||||| ||||||||||||||  ||||   | |||||||||||| |||||        
T  52683814 tcacatagttctaggccatctgtacctatagaaaatgccccagataatgtaaatgaatctactccttccatga---gtgaggatgtcacagaatcagg-- 52683720  T
Q  417 attggcaacaaaccaaaattctaacaatgattcttcggaacctaa 461  Q
       ||||||||||||||||||||| ||||| |||| |||||||||    
T  52683719 ---ggcaacaaaccaaaattctaataatgactctttggaacctaa 52683678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 462
Target Start/End: Complemental strand, 52977974 - 52977839
Alignment:
Q  318 cacatagttctcggctgtttgcacctaaagaaaatgtcggggataatgtaagtgaatctactccttttatgatgagcgaggatgtcacataatcaaatca 417  Q
    |||| |||||| || |||||||||| ||||||||||||     ||||||| ||||| |||||||||| ||||   | ||||||||||||     ||||||    
T  52977974 cacaaagttctaggttgtttgcacc-aaagaaaatgtcccaattaatgtatgtgaacctactcctttcatga---gtgaggatgtcaca-----aaatca 52977884  T
Q  418 ttggcaacaaaccaaaattctaacaatgattcttcggaacctaag 462  Q
      ||||||||||||||||||||| ||||| ||||  |||||||||    
T  52977883 ggggcaacaaaccaaaattctaataatgaatcttttgaacctaag 52977839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 27804270 - 27804319
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||| |||||| ||||||| | |||||||| |||||||||||||    
T  27804270 gtgtttggatgggggaatgttttgagggaatgtaatattttgagggaatt 27804319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 515
Target Start/End: Complemental strand, 40264184 - 40264135
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||| ||||||  |||||| | ||||||||||||||||||||||    
T  40264184 gtgtttggatgggggaatattttgaggtaatgtaatgttttgagggaatt 40264135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 515
Target Start/End: Complemental strand, 44410473 - 44410416
Alignment:
Q  458 ctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||| |||||||||| ||||||  |||||| | ||||||| ||||||||||||||    
T  44410473 ctaagagtgtgtttggattggggaatattttgaggtaatgtaaagttttgagggaatt 44410416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 45565399 - 45565448
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||| |||||| |||||||   ||||||||||||||||||||||    
T  45565399 gtgtttggatgggggaatgttttgagagaatgtaatgttttgagggaatt 45565448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 515
Target Start/End: Complemental strand, 27804426 - 27804370
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| |||||||||| | |||| ||||||| |||||||||||||| || ||||||    
T  27804426 taagagtgtgtttggatggaggaatgttttgaggaaatgtaatgtttagaaggaatt 27804370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 490
Target Start/End: Complemental strand, 37447417 - 37447385
Alignment:
Q  458 ctaagagcgtgtttggataggggaaagttttga 490  Q
    ||||||||||||||||||||||||| |||||||    
T  37447417 ctaagagcgtgtttggataggggaatgttttga 37447385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 515
Target Start/End: Complemental strand, 559 - 510
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  559 gtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 2034 - 2083
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  2034 gtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 2083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 515
Target Start/End: Complemental strand, 42139 - 42083
Alignment:
Q  459 taagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||| |||||||||| |||||| ||||||| | |||||||||||||||| |||||    
T  42139 taagagtgtgtttggatgggggaacgttttgagggaatgtaatgttttgagagaatt 42083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 515
Target Start/End: Original strand, 4070 - 4129
Alignment:
Q  456 acctaagagcgtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    ||||||||| |||||||||||  |||| |||||||   ||||||||||||||||||||||    
T  4070 acctaagagtgtgtttggataaaggaatgttttgagagaatgtaatgttttgagggaatt 4129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 82948 - 82997
Alignment:
Q  466 gtgtttggataggggaaagttttgaagaaatgtaatgttttgagggaatt 515  Q
    |||||||||| || ||| ||||||| | ||||||||||||||||||||||    
T  82948 gtgtttggatgggtgaatgttttgagggaatgtaatgttttgagggaatt 82997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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