View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk444-LTR4-TNT-insertion-4 (Length: 368)
Name: Tnk444-LTR4-TNT-insertion-4
Description: Tnk444-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk444-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 9 - 359
Target Start/End: Complemental strand, 12643041 - 12642681
Alignment:
| Q |
9 |
ctgcatcacggtgcttacaggatcatgagaccttaatgcctaagcaaaaaccttaatggctaaggataatacaacatttttctttggtccgaaaaacact |
108 |
Q |
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| T |
12643041 |
ctgcatcgcggtgcttacaggatcatgagaccttaatgcctaagcaaaaaccttaatggctaaggataatgcaacgtttttctttggtccgaaaaacact |
12642942 |
T |
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| Q |
109 |
tcctatgctcagtgccattctcaattcttctagatagtttggtttaatatccaaaagagaaggatgaagcctcatgttgccactaccatgatcgctagta |
208 |
Q |
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| T |
12642941 |
tcctatgctcagtgccattctcaattcttctagatagtttggtttaatatccaaaagagaaggatgaagcctcatgttgccactaccatgatcgctagta |
12642842 |
T |
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| Q |
209 |
tcaaacaggtcaaattgctatcaa----------agaacacaagttatatggttgttctgaagttgtagatcagactatatgattttaagttgtgggctg |
298 |
Q |
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| T |
12642841 |
tcaaacaggtcaaattgctatcaaagaaggataaagaacacaagttatatgattgttctgaagctgtagatcagactatatgattttaagttgtgggctg |
12642742 |
T |
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| Q |
299 |
caaccgcagttgcagcagtaatatcagagattttgaagtttctatgacaacatcgtaattg |
359 |
Q |
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| T |
12642741 |
cgaccgcagttgcagcagtaatatcagagattttgaagtttctatgacaacatcgcaattg |
12642681 |
T |
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