View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk444-LTR4-TNT-insertion-7 (Length: 795)
Name: Tnk444-LTR4-TNT-insertion-7
Description: Tnk444-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk444-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 9 - 516
Target Start/End: Complemental strand, 51985631 - 51985124
Alignment:
| Q |
9 |
cctgaatgcaaaaaatactacatccaacctcccataataatttgtgctttttctaaccttaatagggagctgtagataatcaagtgacctccaaagcatg |
108 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51985631 |
cctgaatgcaaaaaatactacatccaaccttccataataatttgtgctttttctaaccttaatagggagctgtagataatcaagtgacctccaaagcatg |
51985532 |
T |
|
| Q |
109 |
cgacctataaaaggggggaaacgaaaattcttagatgtaatcaaatgaccttcaaatcatttgagacatatataagggtaaaaggtaaatttggagataa |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51985531 |
cgacctataaaaggggggaaacgaaaattcttagatgtaatcaaatgaccttcaaatcatttgagacatatataagggtaaaaggtaaatttggagataa |
51985432 |
T |
|
| Q |
209 |
atcaactattgtgtggatcgcctgataaacaataatcaaaagataatcgaacacgaatctaagaataatgaagtaagaaatcaacaataaattaataaaa |
308 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
51985431 |
atcaactattgtgtggatcgcctcataaacaataatcaaaagataatccaacacgaatctaagaataataaagtaagaaatcaacaataaattaataaaa |
51985332 |
T |
|
| Q |
309 |
tgctcaacttatggatcatctgataaataataatcaaaagataatcatacatgaatctaagaataacaaaacaagaaatgaacaataaattaataaaatg |
408 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51985331 |
cgttcaacttatggatcatctgataaataataatcaaaagataatcagacatgaatctaagaataacaaaacaagaaatgaacaataaattaataaaatg |
51985232 |
T |
|
| Q |
409 |
ctcaacttatggattgcatgataattaataatcaaaagataatctgacatgaatctaagagtaatgaagtaagaaatcaacaataaattaataaaatgct |
508 |
Q |
| |
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| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51985231 |
cccaacttatggatcgcatgataattaataatcaaaagataatctgacatgaatctaagcgtaatgaagtaagaaatcaacaataaattaataaaatggc |
51985132 |
T |
|
| Q |
509 |
caacttat |
516 |
Q |
| |
|
|||||||| |
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| T |
51985131 |
caacttat |
51985124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 435 - 794
Target Start/End: Complemental strand, 51985401 - 51985042
Alignment:
| Q |
435 |
aataatcaaaagataatctgacatgaatctaagagtaatgaagtaagaaatcaacaataaattaataaaatgctcaacttatggatcatctgataaataa |
534 |
Q |
| |
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|||||||||||||||||| ||| |||||||||| |||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
51985401 |
aataatcaaaagataatccaacacgaatctaagaataataaagtaagaaatcaacaataaattaataaaacgttcaacttatggatcatctgataaataa |
51985302 |
T |
|
| Q |
535 |
taatcaaaagataatcatacatgaatctaagaataacaaaacaagaaatgaacaataaattaataaaatgctcaacttatggattgcatgataattaata |
634 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
51985301 |
taatcaaaagataatcagacatgaatctaagaataacaaaacaagaaatgaacaataaattaataaaatgcccaacttatggatcgcatgataattaata |
51985202 |
T |
|
| Q |
635 |
atcaaaagataatctgacatgaatctaagagtaatgaagtaagaaatcaacaataaattaataaaatggccaacttataaattgaaaaattcggattata |
734 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51985201 |
atcaaaagataatctgacatgaatctaagcgtaatgaagtaagaaatcaacaataaattaataaaatggccaacttataaattgaaaaattcggattata |
51985102 |
T |
|
| Q |
735 |
aaaactcacatccaaccccgtgtaataatttgtgttctttctagccttaatagggaatca |
794 |
Q |
| |
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|||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
51985101 |
aaaactcagatccaaccccctttaataatttgtgttctttctagccttaatagggaatca |
51985042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 331 - 614
Target Start/End: Complemental strand, 51985407 - 51985124
Alignment:
| Q |
331 |
ataaataataatcaaaagataatcatacatgaatctaagaataacaaaacaagaaatgaacaataaattaataaaatgctcaacttatggattgcatgat |
430 |
Q |
| |
|
||||| |||||||||||||||||| ||| |||||||||||||| ||| ||||||| |||||||||||||||||| | ||||||||||||| |||| |
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| T |
51985407 |
ataaacaataatcaaaagataatccaacacgaatctaagaataataaagtaagaaatcaacaataaattaataaaacgttcaacttatggatcatctgat |
51985308 |
T |
|
| Q |
431 |
aattaataatcaaaagataatctgacatgaatctaagagtaatgaagtaagaaatcaacaataaattaataaaatgctcaacttatggatcatctgataa |
530 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||| ||| || ||||||| ||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
51985307 |
aaataataatcaaaagataatcagacatgaatctaagaataacaaaacaagaaatgaacaataaattaataaaatgcccaacttatggatcgcatgataa |
51985208 |
T |
|
| Q |
531 |
ataataatcaaaagataatcatacatgaatctaagaataacaaaacaagaaatgaacaataaattaataaaatgctcaacttat |
614 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||| || ||||||| |||||||||||||||||||| |||||||| |
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| T |
51985207 |
ttaataatcaaaagataatctgacatgaatctaagcgtaatgaagtaagaaatcaacaataaattaataaaatggccaacttat |
51985124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 527 - 712
Target Start/End: Complemental strand, 51985407 - 51985222
Alignment:
| Q |
527 |
ataaataataatcaaaagataatcatacatgaatctaagaataacaaaacaagaaatgaacaataaattaataaaatgctcaacttatggattgcatgat |
626 |
Q |
| |
|
||||| |||||||||||||||||| ||| |||||||||||||| ||| ||||||| |||||||||||||||||| | ||||||||||||| |||| |
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| T |
51985407 |
ataaacaataatcaaaagataatccaacacgaatctaagaataataaagtaagaaatcaacaataaattaataaaacgttcaacttatggatcatctgat |
51985308 |
T |
|
| Q |
627 |
aattaataatcaaaagataatctgacatgaatctaagagtaatgaagtaagaaatcaacaataaattaataaaatggccaacttat |
712 |
Q |
| |
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|| ||||||||||||||||||| ||||||||||||||| ||| || ||||||| |||||||||||||||||||| ||||||||| |
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| T |
51985307 |
aaataataatcaaaagataatcagacatgaatctaagaataacaaaacaagaaatgaacaataaattaataaaatgcccaacttat |
51985222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 219 - 311
Target Start/End: Original strand, 52003510 - 52003602
Alignment:
| Q |
219 |
gtgtggatcgcctgataaacaataatcaaaagataatcgaacacgaatctaagaataatgaagtaagaaatcaacaataaattaataaaatgc |
311 |
Q |
| |
|
||||||||||||| |||| ||| |||||||||||||| |||| |||||||| ||||||||| |||||||| ||||| ||||||||||||| |
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| T |
52003510 |
gtgtggatcgcctagtaaataatgatcaaaagataatcagacacaaatctaaggataatgaagcaagaaatcgacaatggattaataaaatgc |
52003602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 507
Target Start/End: Original strand, 52003529 - 52003602
Alignment:
| Q |
434 |
taataatcaaaagataatctgacatgaatctaagagtaatgaagtaagaaatcaacaataaattaataaaatgc |
507 |
Q |
| |
|
|||| |||||||||||||| |||| |||||||| |||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
52003529 |
taatgatcaaaagataatcagacacaaatctaaggataatgaagcaagaaatcgacaatggattaataaaatgc |
52003602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 630 - 702
Target Start/End: Original strand, 52003529 - 52003601
Alignment:
| Q |
630 |
taataatcaaaagataatctgacatgaatctaagagtaatgaagtaagaaatcaacaataaattaataaaatg |
702 |
Q |
| |
|
|||| |||||||||||||| |||| |||||||| |||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
52003529 |
taatgatcaaaagataatcagacacaaatctaaggataatgaagcaagaaatcgacaatggattaataaaatg |
52003601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 409
Target Start/End: Original strand, 52003525 - 52003602
Alignment:
| Q |
332 |
taaataataatcaaaagataatcatacatgaatctaagaataacaaaacaagaaatgaacaataaattaataaaatgc |
409 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||||| |||| || |||||||| ||||| ||||||||||||| |
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|
| T |
52003525 |
taaataatgatcaaaagataatcagacacaaatctaaggataatgaagcaagaaatcgacaatggattaataaaatgc |
52003602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 528 - 605
Target Start/End: Original strand, 52003525 - 52003602
Alignment:
| Q |
528 |
taaataataatcaaaagataatcatacatgaatctaagaataacaaaacaagaaatgaacaataaattaataaaatgc |
605 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||||| |||| || |||||||| ||||| ||||||||||||| |
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|
| T |
52003525 |
taaataatgatcaaaagataatcagacacaaatctaaggataatgaagcaagaaatcgacaatggattaataaaatgc |
52003602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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