View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk446-LTR4-TNT-insertion-2 (Length: 732)
Name: Tnk446-LTR4-TNT-insertion-2
Description: Tnk446-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk446-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 544; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 8 - 615
Target Start/End: Complemental strand, 53693865 - 53693258
Alignment:
| Q |
8 |
atggttactgaacatggagtgcttttggtggtacatggcattctgttagattggagttggtttgagcttcatcatcttgtttgctcaaagaatcatcagt |
107 |
Q |
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| T |
53693865 |
atggttactgaacatggagtgcttttggtggtacatggcattctgttagattggagttggtttgagcttcatcatcttgtttgctcaaagaatcatcagt |
53693766 |
T |
|
| Q |
108 |
atcataatacagttttggttcctgaccaacctatatattttgtcattgttatcatggttttccatgttttgaaatttctaatctgtatggattattcctt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53693765 |
atcataatacagttttggttcctgaccaacctatatattttgtcattgttatcatggttttccatgttttgaaatttctaatctgtatggattattcctt |
53693666 |
T |
|
| Q |
208 |
cacaggtcagaggagactcgaaacagaaatgcagtagcatcaactgcaataagtattcaataccatacctagacatatgagttataatcagtggtgtaag |
307 |
Q |
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| T |
53693665 |
cacaggtcagaggagactcgaaacagaaatgcagtagcatcaactgcaataagtattcaataccatacctagacatatgagttataatcagtggtgtaag |
53693566 |
T |
|
| Q |
308 |
gtttaactcaaaacaaacggaagatcattatcactaaaactatgtgacagggaagaacgtagtttaaaatctgtcnnnnnnnnnnnncacttagtttaaa |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
53693565 |
gtttaactcaaaacaaacggaagatcattatcactataactatgtgacagggaagaacatagtttaaaatctgtcaaaaaaaaaaaaaacttagtttaaa |
53693466 |
T |
|
| Q |
408 |
atctgtaaacaatacaaagcatcatttattggctacttcatattttcttccaatttcactatattcattttcgtaggaaactaggaatagttgaggatga |
507 |
Q |
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| T |
53693465 |
atctgtagacaatacaaagcatcatttattggctacttcatattttcttccaatttcactatattcattttcgtaggaaactaggaatagttgaggatga |
53693366 |
T |
|
| Q |
508 |
cgactatcctacctatttatcaaatccctttaagcaaaaaatatgtttgggctgaatggtaggctgggttacactagtatatttcaattagctatgttta |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
53693365 |
cgactatcctacctatttatcaaatccctttaagcagaagatatgtttgggctgaatggtaggctggattacactagtatatttcaattagctatgttta |
53693266 |
T |
|
| Q |
608 |
gattatta |
615 |
Q |
| |
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|||||||| |
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| T |
53693265 |
gattatta |
53693258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 615 - 732
Target Start/End: Complemental strand, 53689239 - 53689122
Alignment:
| Q |
615 |
attatgttttcaatctcctttcctaatttcaattaaaaaagaaataccgaataagtttgaagggacttctttttctgcaagtaaaagaaattattacaat |
714 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53689239 |
attaagttttcaatctcctttcctaatttcaattaaaaaagaaatactgaataagtttgaagggacttctttttctgcaagtaaaagaaattattacaat |
53689140 |
T |
|
| Q |
715 |
agagatgatgcggtacgc |
732 |
Q |
| |
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|||||||||| ||||||| |
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| T |
53689139 |
agagatgatgtggtacgc |
53689122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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