View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk446-LTR4-TNT-insertion-4 (Length: 531)
Name: Tnk446-LTR4-TNT-insertion-4
Description: Tnk446-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk446-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 7 - 521
Target Start/End: Original strand, 29620029 - 29620542
Alignment:
| Q |
7 |
agtgtccttatcttgatactgttaatagacaggtattttattcagttggtccattgcagataaatgctttactagattgcatatgtatttgatttttgta |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29620029 |
agtgtccttatcttgatactgttaatagacaggtattttattcagttggtccattgtagataaatgctttactagattgcatatgtatttgatttttgta |
29620128 |
T |
|
| Q |
107 |
tcgttttgtgtgcaggttttggattttgacttcgagaggtcatgttccgtctctttgtcaaaatttaatgtgtatgcgtgtttggtttgtggtaagtatt |
206 |
Q |
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| T |
29620129 |
tcgttttgtgtgcaggttttggattttgacttcgagaggtcatgttccgtctctttgtcaaaatttaatgtgtatgcgtgtttggtttgtggtaagtatt |
29620228 |
T |
|
| Q |
207 |
accaagggagagggaaaaggtctcatgcctatacgcatagcttggaagctggacaccatgtttatatcaatctcctaactgaaaaagtctactgtcttcc |
306 |
Q |
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| T |
29620229 |
accaagggagagggaaaaggtctcatgcctatacgcatagcttggaagctggacaccatgtttatatcaatctcctaactgaaaaagtctactgtcttcc |
29620328 |
T |
|
| Q |
307 |
cgatggttatgaagttaatgatccttcgttagatgacattcggcatgtcctgaacccaaggttcgtctaatttgttcatctgcctttgtttgtttgctgc |
406 |
Q |
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| T |
29620329 |
cgatggttatgaagttaatgatccttcgttagatgacatttggcatgtcctgaacccaaggttcgtctaatttgttcatctgcctttgtttgtttgctgc |
29620428 |
T |
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| Q |
407 |
acaaaatttttcaaaaatagaatcccattttaggttctgaaaaaatgttttttcatgaggaataatcattttatgcttgtttcttaggtcattagtattg |
506 |
Q |
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| T |
29620429 |
acaaaatttttcaaaaatagaatccaattttaggttctgaaaaaatgttttttcatgaggaataatcattttatgcttgtttcttaggtcatt-gtattg |
29620527 |
T |
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| Q |
507 |
ttactttttctatta |
521 |
Q |
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| T |
29620528 |
ttactttttctatta |
29620542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 429
Target Start/End: Original strand, 29659018 - 29659438
Alignment:
| Q |
9 |
tgtccttatcttgatactgttaatagacaggtattttattcagttggtccattgcagataaatgctttactagattgcatatg----tatttgatttttg |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| ||| |||| ||||||||| ||||||| ||||| |
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| T |
29659018 |
tgtccttatcttgatactgttaatagacaggtattttattcatctggtgcattgtagataaatgttttgctagtttgcatatgtatgtatttgacttttg |
29659117 |
T |
|
| Q |
105 |
tatcgttttgtgtgcaggttttggattttgacttcgagaggtcatgttccgtctctttgtcaaaatttaatgtgtatgcgtgtttggtttgtggtaagta |
204 |
Q |
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|||| ||||||||||||||||||||||||||||| |||| || ||||| || ||||||||||| || ||||||||||| |||||||||||||||||||| |
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| T |
29659118 |
tatcattttgtgtgcaggttttggattttgactttgagaagttctgttctgtgtctttgtcaaatttaaatgtgtatgcatgtttggtttgtggtaagta |
29659217 |
T |
|
| Q |
205 |
ttaccaagggagagggaaaaggtctcatgcctatacgcatagcttggaagctggacaccatgtttatatcaatctcctaactgaaaaagtctactgtctt |
304 |
Q |
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| T |
29659218 |
ttaccaaggtagagggaaaaagtctcatgcctatacgcatagtctggaagctggacaccatgtttatatcaatctcctgactgaaaaggtcttctgtctt |
29659317 |
T |
|
| Q |
305 |
cccgatggttatgaagttaatgatccttcgttagatgacattcggcatgtcctgaacccaaggttcgtctaatttgttcatctgcctttgtttgtttgct |
404 |
Q |
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| T |
29659318 |
cccgatggctatgaaattgatgatccttcattagatgacattcggcatgtcctgaacccaaggttcgtctaatttgttcatttgcc----attgtttgct |
29659413 |
T |
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| Q |
405 |
gcacaaaatttttcaaaaatagaat |
429 |
Q |
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||||| ||| ||||||||||||||| |
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| T |
29659414 |
gcacacaatctttcaaaaatagaat |
29659438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 505
Target Start/End: Original strand, 29659881 - 29659923
Alignment:
| Q |
463 |
gaggaataatcattttatgcttgtttcttaggtcattagtatt |
505 |
Q |
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| T |
29659881 |
gaggaataatcgttttatgcttttttcttaggtcattattatt |
29659923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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