View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk446-LTR4-TNT-insertion-5 (Length: 738)

Name: Tnk446-LTR4-TNT-insertion-5
Description: Tnk446-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk446-LTR4-TNT-insertion-5
Tnk446-LTR4-TNT-insertion-5
[»] chr3 (5 HSPs)
chr3 (98-738)||(2512160-2512801)
chr3 (129-307)||(2509339-2509517)
chr3 (120-291)||(2516844-2517015)
chr3 (459-536)||(2509036-2509110)
chr3 (317-368)||(2509234-2509285)


Alignment Details
Target: chr3 (Bit Score: 552; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 98 - 738
Target Start/End: Complemental strand, 2512801 - 2512160
Alignment:
Q  98 tgatgaaagtttttgttgcgatatatgtttatgaagagagaagggaatggaaggactaaaagaaggtaatagtcatacgaaaataatttttagagaatga 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2512801 tgatgaaagtttttgttgcgatatatgtttatgaagagagaagggaatggaaggactaaaagaaggtaatagtcatacgaaaataatttttagagaatga 2512702  T
Q  198 aaggaacatgaatttaactgttacttactatctcttgcatgcaaatttggaagtgagcatgtttagtatgtgtgataccacatggctcaataataatctg 297  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2512701 aaggaacatgaatttaactgttacttactatctcttgcatgtaaatttggaagtgagcatgtttagtatgtgtgataccacatggctcaataataatctg 2512602  T
Q  298 g-agtgcacctnnnnnnnnntatatattaaaattcgatggatccaattaataaaatgttcaaaaagtagtaacagatcgtaagattaaagaatcttgctt 396  Q
    | |||||||||          |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2512601 ggagtgcacctaaaaaaaaaaatatattaaaattcgatggatccaattaataaaatgttcaaaaaatagtaacagatcgtaagattaaagaatcttgctt 2512502  T
Q  397 atgataagtcgtttgtcgatgtttgaataaaatggttccttttatgtttgaatattgcttatgagaaatattaaatccgaagttttattgttcatgactt 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2512501 atgataagtcgtttgtcgatgtttgaataaaatggttccttttatgtttgaatattgcttatgagaaatattaaatccgaagttttattgtttatgactt 2512402  T
Q  497 aattcaaaagtgattcttttatagttttagagatttgaaaacatcaactttatgtggtaagcttcaaacaatgttgagagtttgatgacaacttgtatag 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2512401 aattcaaaagtgattcttttatagttttagagatttgaaaacatcaactttgtgtgggaagcttcaaacaatgttgagagtttgatgacaacttgtatag 2512302  T
Q  597 acactggannnnnnnnngttcgttgaaagaatagacattagaatgttggcattcgctatgtcacttcaacatataatttagttgcaactttatatgttaa 696  Q
    |||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2512301 acaccggatttttttttgttcgttgaaagaatagacattagaatgttggcattcgctatgtcacttcaacatataatttagttgcaactttatatgttaa 2512202  T
Q  697 gcattacttattttatggcttcatgggttattgttaattaat 738  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2512201 gcattacttattttatggcttcatgggttattgttaattaat 2512160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 129 - 307
Target Start/End: Complemental strand, 2509517 - 2509339
Alignment:
Q  129 tgaagagagaagggaatggaaggactaaaagaaggtaatagtcatacgaaaataatttttagagaatgaaaggaacatgaatttaactgttacttactat 228  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  2509517 tgaagaaagaagggaatggaaggactaaaagaaggtaatagtcatacgaaaataattttcagagaatgaaaggaacattaatttaactgttacttactat 2509418  T
Q  229 ctcttgcatgcaaatttggaagtgagcatgtttagtatgtgtgataccacatggctcaataataatctggagtgcacct 307  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||    
T  2509417 ctcttgcatgtaaatttcgaagtgagcatgtttagtatgtgtgatactacatggcttaataataatttggagtgcacct 2509339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 120 - 291
Target Start/End: Complemental strand, 2517015 - 2516844
Alignment:
Q  120 atatgtttatgaagagagaagggaatggaaggactaaaagaaggtaatagtcatacgaaaataatttttagagaatgaaaggaacatgaatttaactgtt 219  Q
    |||||||| |||||| ||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || |||    
T  2517015 atatgtttttgaagaaagaagtgaaaggaaggactaaaagaaggtaatattcatacgaaaataatttatagagaatgaaaggaacatgaatttgaccgtt 2516916  T
Q  220 acttactatctcttgcatgcaaatttggaagtgagcatgtttagtatgtgtgataccacatggctcaataat 291  Q
      ||||||||  |||||||||||| | | |||||||||||||||||||||||||||||||||||| ||||||    
T  2516915 tgttactatccattgcatgcaaatgttggagtgagcatgtttagtatgtgtgataccacatggcttaataat 2516844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 536
Target Start/End: Complemental strand, 2509110 - 2509036
Alignment:
Q  459 gagaaatattaaatccgaagttttattgttcatgacttaattcaaaagtgattctttt-atagttttagagatttgaaa 536  Q
    |||||||||||||| | || |||||||||| |||||||    |||||||||| ||||| ||||||||||||||||||||    
T  2509110 gagaaatattaaatgcaaaattttattgtttatgactt----caaaagtgatcctttttatagttttagagatttgaaa 2509036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 2509285 - 2509234
Alignment:
Q  317 tatatattaaaattcgatggatccaattaataaaatgttcaaaaagtagtaa 368  Q
    |||||||||||| |||||||||| |||| || ||||||||||||| ||||||    
T  2509285 tatatattaaaactcgatggatctaatttattaaatgttcaaaaaatagtaa 2509234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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