View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk446-LTR4-TNT-insertion-6 (Length: 502)
Name: Tnk446-LTR4-TNT-insertion-6
Description: Tnk446-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk446-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 8 - 495
Target Start/End: Original strand, 36918090 - 36918580
Alignment:
| Q |
8 |
aaaacaaggtaattgtaacaccnnnnnnncttttcatcatgatgtttcttagtaaccaatgttctgagttgcaaattagtttcttgtctggtttgttttt |
107 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36918090 |
aaaacaaggtaattgtaacacctttttttcttttcatcatgatgtttcttagtaaccaatgttctgagttgcaaattagtttcttgtctggtttgttttt |
36918189 |
T |
|
| Q |
108 |
ggaaatttttctattttgtatgcaattaaagtagaaataatgtaatatacttctaactcagttaannnnnnnnnatt--tatatcagattactagttaaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
36918190 |
ggaaatttttctattttgtatgcaattaaagtagaaataatgtaatatacttctaactcagttaaaattttttgattcatatatcagattactagttaaa |
36918289 |
T |
|
| Q |
206 |
cctcaaatttttattttctaactctttaaaaatcggctctgtttacttcttatgtttcttgtttatacttttacctggaataataaacaaattagaatat |
305 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
36918290 |
cctcagatttttattttctaattctttaaaaatcggctctgtttacttcttatgtttcttgtttatatttttacttggaataataaacaaattagaatat |
36918389 |
T |
|
| Q |
306 |
agttctaacatcattctcttttacaattttttaaaatagatcttgcacttttagaaattttgaaaatgacaaaacattgtttttcattgtttctaaaaga |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36918390 |
agttctaacatcattctcttttacaattttttaaaatagatcatgcatttttagaaattttgaaaatgacaaaacattgtttttcattgttactaaaaga |
36918489 |
T |
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| Q |
406 |
ggaaatgaaaaagttaatttgtttcacagtttgagctattcagtaggtttaagaagtg-aaaagttaatctgacacagtttttaacaattg |
495 |
Q |
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| T |
36918490 |
ggaaatgaaaaagttaatttgtttcacagtttgagctattcaataggtttaagaagtgaaaaagctaatctgacacagtttttaacaattg |
36918580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 323 - 386
Target Start/End: Original strand, 50552924 - 50552987
Alignment:
| Q |
323 |
cttttacaattttttaaaatagatcttgcacttttagaaattttgaaaatgacaaaacattgtt |
386 |
Q |
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| T |
50552924 |
cttttacaatttttgaaaatagatctagcattttaagaaattttgaaaatgtcaaaacattgtt |
50552987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 387
Target Start/End: Complemental strand, 2315467 - 2315400
Alignment:
| Q |
322 |
tcttttacaattttttaaaatagatcttgcactttt--agaaattttgaaaatgacaaaacattgttt |
387 |
Q |
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| T |
2315467 |
tcttttacaatattttgaaacagatctagcattttttcagaaattttgaaaatgtcaaaacactgttt |
2315400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 389
Target Start/End: Complemental strand, 37697576 - 37697511
Alignment:
| Q |
324 |
ttttacaattttttaaaatagatcttgcacttttagaaattttgaaaatgacaaaacattgttttt |
389 |
Q |
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| T |
37697576 |
ttttacaattttttaaaatagattcagcagtttaagaaattttgaaaatgtcaaaacattgttttt |
37697511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 403
Target Start/End: Original strand, 26128575 - 26128659
Alignment:
| Q |
317 |
cattctcttttacaattttttaaaatagatcttgcacttttagaaattttgaaaatgacaaaacattgtttttcattgtttctaaaa |
403 |
Q |
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| T |
26128575 |
cattttcttttataattttttaaaatagatctagcattttcaaaaacattcaaaatggcaaaacattg--tttcattgtttctaaaa |
26128659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 381
Target Start/End: Complemental strand, 18835996 - 18835929
Alignment:
| Q |
314 |
catcattctcttttacaattttttaaaatagatcttgcacttttagaaattttgaaaatgacaaaaca |
381 |
Q |
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| T |
18835996 |
catcattttctcctacaatttttgggaacagatcttgcattttcagaaattttgaaaatgacaaaaca |
18835929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 403
Target Start/End: Complemental strand, 33583183 - 33583142
Alignment:
| Q |
362 |
attttgaaaatgacaaaacattgtttttcattgtttctaaaa |
403 |
Q |
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| T |
33583183 |
atttcgaaaatgacaaaatattatttttcattgtttctaaaa |
33583142 |
T |
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