View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk450-LTR4-TNT-insertion-1 (Length: 596)
Name: Tnk450-LTR4-TNT-insertion-1
Description: Tnk450-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk450-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 236 - 589
Target Start/End: Complemental strand, 33313298 - 33312948
Alignment:
| Q |
236 |
tattacatgtaaacaattaatcagccccgttagaaatcatcatcactccaatcccttgtttcatgttttcaaccttgtcatctatccaatttctccctta |
335 |
Q |
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| T |
33313298 |
tattacatgtaaacaattaatcagccccgttataaatcatca---ctccaatcccttgtttcatgtttttgaccttgtcatctatccaatttctccctta |
33313202 |
T |
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| Q |
336 |
gaaagcaaaatttatccaatttcaaataacgttggatatgactcatagtttactcgtaagtggacaggtcgctcgagtggggcgagagccgagagcgact |
435 |
Q |
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| T |
33313201 |
gaaagcaaaatttatccaatttcaaataacgttggatatgactcatagtttactcctaagtgaacaggtcgctcgagtggggcgagagccgagagcgact |
33313102 |
T |
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| Q |
436 |
gccctttggacttggctcaaatgtttgtttggccgggattgcagggtgtggttgggtgataatagacaagttatactttgcaaaccctaagctttcaggg |
535 |
Q |
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| T |
33313101 |
gccctttggacttggctcaaatgtttgtttggctgcgattgcagggtgtggttgggtgataatagacaagttatacttcgcaaaccctaagctttcagcg |
33313002 |
T |
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| Q |
536 |
ataatagaaatatatcacatctgctatgtagttagaggcgtaggcacaattggt |
589 |
Q |
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| T |
33313001 |
ataatagaaatatatcacatctgctatgtagttagaggcgtaggcacaattggt |
33312948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 9 - 164
Target Start/End: Complemental strand, 33313475 - 33313329
Alignment:
| Q |
9 |
taaacacgtataccaacttgataaatgcatgtttttattgttggtgactgtagttcatggaagcttcaaagcgtagctttcgttaaaatcaaggtggcac |
108 |
Q |
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| T |
33313475 |
taaacacgtataccaacttgataaatgcatgtttttattgttggtgactgtagttcatggaagcttcaaagcgtagctttcgttaaaatcaaggtggcac |
33313376 |
T |
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| Q |
109 |
accgtgattttacattgaacattttatgtggttacctggaatcttccttttgtcta |
164 |
Q |
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| T |
33313375 |
ac---------acattgaacattttatgtggttacctggaatcttccttttgtcta |
33313329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 545
Target Start/End: Complemental strand, 34569422 - 34569381
Alignment:
| Q |
504 |
agttatactttgcaaaccctaagctttcagggataatagaaa |
545 |
Q |
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| T |
34569422 |
agttttactttgtaaaccctaagctttcagtgataatagaaa |
34569381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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