View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Tnk450-LTR4-TNT-insertion-10 (Length: 322)
Name: Tnk450-LTR4-TNT-insertion-10
Description: Tnk450-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk450-LTR4-TNT-insertion-10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 31682659 - 31682355
Alignment:
| Q |
8 |
ctttgcacacttaaaattgatcgttgcgacgttctgcagtacttgcctgaacaggggcttccttcctccctaaatcagctcaatatcagggattgcccag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31682659 |
ctttgcacacttaaaattgatcgttgcgacgttctgcagtacttgcctgaacaggggcttccttcctccctaaatcagctcaatatcagggattgcccag |
31682560 |
T |
|
| Q |
108 |
tgttgactccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgacaagaaagttgggcaaccttg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31682559 |
tgttgactccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgacaagaaagttgggcaaccttg |
31682460 |
T |
|
| Q |
208 |
gtatagatattgatgaccaaaaagtgtttgggtctgtggactaaaacaccaaaactaggcaaaataatcatgttacttctgtactctacccaactttgca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31682459 |
gtatagatattgatgaccaaaaagtgtttgggtctgtggactaaaacaccaaaactaggcaaaataatcatgttacttctgtactctacccaactttgca |
31682360 |
T |
|
| Q |
308 |
gatta |
312 |
Q |
| |
|
||||| |
|
|
| T |
31682359 |
gatta |
31682355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 31895773 - 31896077
Alignment:
| Q |
8 |
ctttgcacacttaaaattgatcgttgcgacgttctgcagtacttgcctgaacaggggcttccttcctccctaaatcagctcaatatcagggattgcccag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31895773 |
ctttgcacacttaaaattgatcgttgcgacgttctgcagtacttgcctgaacaggggcttccttcctccctaaatcagctcaatatcagggattgcccag |
31895872 |
T |
|
| Q |
108 |
tgttgactccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgacaagaaagttgggcaaccttg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31895873 |
tgttgactccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgacaagaaagttgggcaaccttg |
31895972 |
T |
|
| Q |
208 |
gtatagatattgatgaccaaaaagtgtttgggtctgtggactaaaacaccaaaactaggcaaaataatcatgttacttctgtactctacccaactttgca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31895973 |
gtatagatattgatgaccaaaaagtgtttgggtctgtggactaaaacaccaaaactaggcaaaataatcatgttacttctgtactctacccaactttgca |
31896072 |
T |
|
| Q |
308 |
gatta |
312 |
Q |
| |
|
||||| |
|
|
| T |
31896073 |
gatta |
31896077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 31900357 - 31900661
Alignment:
| Q |
8 |
ctttgcacacttaaaattgatcgttgcgacgttctgcagtacttgcctgaacaggggcttccttcctccctaaatcagctcaatatcagggattgcccag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31900357 |
ctttgcacacttaaaattgatcgttgcgacgttctgcagtacttgcctgaacaggggcttccttcctccctaaatcagctcaatatcagggattgcccag |
31900456 |
T |
|
| Q |
108 |
tgttgactccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgacaagaaagttgggcaaccttg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31900457 |
tgttgactccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgacaagaaagttgggcaaccttg |
31900556 |
T |
|
| Q |
208 |
gtatagatattgatgaccaaaaagtgtttgggtctgtggactaaaacaccaaaactaggcaaaataatcatgttacttctgtactctacccaactttgca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31900557 |
gtatagatattgatgaccaaaaagtgtttgggtctgtggactaaaacaccaaaactaggcaaaataatcatgttacttctgtactctacccaactttgca |
31900656 |
T |
|
| Q |
308 |
gatta |
312 |
Q |
| |
|
||||| |
|
|
| T |
31900657 |
gatta |
31900661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 31949714 - 31950018
Alignment:
| Q |
8 |
ctttgcacacttaaaattgatcgttgcgacgttctgcagtacttgcctgaacaggggcttccttcctccctaaatcagctcaatatcagggattgcccag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31949714 |
ctttgcacacttaaaattgatcgttgcgacgttctgcagtacttgcctgaacaggggcttccttcctccctaaatcagctcaatatcagggattgcccag |
31949813 |
T |
|
| Q |
108 |
tgttgactccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgacaagaaagttgggcaaccttg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31949814 |
tgttgactccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgacaagaaagttgggcaaccttg |
31949913 |
T |
|
| Q |
208 |
gtatagatattgatgaccaaaaagtgtttgggtctgtggactaaaacaccaaaactaggcaaaataatcatgttacttctgtactctacccaactttgca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31949914 |
gtatagatattgatgaccaaaaagtgtttgggtctgtggactaaaacaccaaaactaggcaaaataatcatgttacttctgtactctacccaactttgca |
31950013 |
T |
|
| Q |
308 |
gatta |
312 |
Q |
| |
|
||||| |
|
|
| T |
31950014 |
gatta |
31950018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 31916066 - 31916370
Alignment:
| Q |
8 |
ctttgcacacttaaaattgatcgttgcgacgttctgcagtacttgcctgaacaggggcttccttcctccctaaatcagctcaatatcagggattgcccag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31916066 |
ctttgcacacttaaaattgatcgttgcgacgttctgcagtacttgcctgaacaggggcttccttcctccctaaatcagctcaatatcagggattgcccag |
31916165 |
T |
|
| Q |
108 |
tgttgactccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgacaagaaagttgggcaaccttg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31916166 |
tgttgactccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgacaagaaagttgggcaaccttg |
31916265 |
T |
|
| Q |
208 |
gtatagatattgatgaccaaaaagtgtttgggtctgtggactaaaacaccaaaactaggcaaaataatcatgttacttctgtactctacccaactttgca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31916266 |
gtatagatattgatgaccaaaaagtgtttgggcctgtggactaaaacaccaaaactaggcaaaataatcatgttacttctgtactctacccaactttgca |
31916365 |
T |
|
| Q |
308 |
gatta |
312 |
Q |
| |
|
||||| |
|
|
| T |
31916366 |
gatta |
31916370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 52651516 - 52651278
Alignment:
| Q |
12 |
gcacacttaaaattgatcgttgcgacgttctgcagtacttgcctgaacaggggcttccttcctccctaaatcagctcaatatcagggattgcccagtgtt |
111 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||||| |||| |
|
|
| T |
52651516 |
gcacacttacaattgatcgttgtgacgtgctgcggtacttgcctgaacaggggtttccttcctccctaaatcagcactatatcagggagtgcccaatgtt |
52651417 |
T |
|
| Q |
112 |
gactccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgacaagaaagttgggcaaccttggtat |
211 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52651416 |
gactccaagacttaaacccaagaaaggaaagtactggcgcaaggtggctcatattcctcatatagaaattgatgacaagaaagttgggcaaccttggtat |
52651317 |
T |
|
| Q |
212 |
agatattgatgaccaaaaagtgtttgggtctgtggacta |
250 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
52651316 |
agatatcgatgaccaaaaagtgtttgggtctgtagacta |
52651278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 16035664 - 16035453
Alignment:
| Q |
20 |
aaaattgatcgttgcgacgttctgcagtacttgcctgaacaggggcttccttcctccctaaatcagctcaatatcagggattgcccagtgttgactccaa |
119 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||| || ||||||||||||||||| |||||||||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
16035664 |
aaaattaatcgttgcgacgtgttgcggtactttccagaacaggggcttccttcttccctaaatcagctatgtatcagggaatgcccaatgttgactccaa |
16035565 |
T |
|
| Q |
120 |
gacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgacaagaaagttgggcaaccttggtatagatattg |
219 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||| |||| || |||||| |||||||||| |
|
|
| T |
16035564 |
gacttgaacccaagacaggaaagtactggcacaaggtggctcatatctaacatatagaaattgaagacaagagagtttgggaaccttcttatagatatta |
16035465 |
T |
|
| Q |
220 |
atgaccaaaaag |
231 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
16035464 |
atgagcaaaaag |
16035453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 31 - 231
Target Start/End: Complemental strand, 16061760 - 16061560
Alignment:
| Q |
31 |
ttgcgacgttctgcagtacttgcctgaacaggggcttccttcctccctaaatcagctcaatatcagggattgcccagtgttgactccaagacttaaaccc |
130 |
Q |
| |
|
||||||||| ||| ||||||||| ||||| ||||||||||| |||||||||||||| ||||||||| |||||| ||||||||||||||||| ||||| |
|
|
| T |
16061760 |
ttgcgacgtgttgcggtacttgccagaacaagggcttccttcttccctaaatcagctatgtatcagggaatgcccaatgttgactccaagacttgaaccc |
16061661 |
T |
|
| Q |
131 |
gagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgacaagaaagttgggcaaccttggtatagatattgatgaccaaaaa |
230 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| |||| | |||||| |||||||||| |||| |||||| |
|
|
| T |
16061660 |
aagacaggaaagtactggcacaaggtggctcatattcaacatatagaaattgaagacaagagagtttgagaaccttcttatagatattaatgagcaaaaa |
16061561 |
T |
|
| Q |
231 |
g |
231 |
Q |
| |
|
| |
|
|
| T |
16061560 |
g |
16061560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 16052420 - 16052209
Alignment:
| Q |
20 |
aaaattgatcgttgcgacgttctgcagtacttgcctgaacaggggcttccttcctccctaaatcagctcaatatcagggattgcccagtgttgactccaa |
119 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||| || ||||||||||||||||| |||||||||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
16052420 |
aaaattaatcgttgcgacgtgttgcggtactttccagaacaggggcttccttcttccctaaatcagctatgtatcagggaatgcccaatgttgactccaa |
16052321 |
T |
|
| Q |
120 |
gacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgacaagaaagttgggcaaccttggtatagatattg |
219 |
Q |
| |
|
||||| |||| ||| | ||||||||||| |||||||| |||||| | |||||||||||||| ||||||| |||| || |||||| |||||||||| |
|
|
| T |
16052320 |
gacttgaacctaagaaacgaaagtactggcacaaggtggatcatatccaacatatagaaattgaagacaagagagtttgggaaccttcttatagatatta |
16052221 |
T |
|
| Q |
220 |
atgaccaaaaag |
231 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
16052220 |
atgagcaaaaag |
16052209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 16057625 - 16057414
Alignment:
| Q |
20 |
aaaattgatcgttgcgacgttctgcagtacttgcctgaacaggggcttccttcctccctaaatcagctcaatatcagggattgcccagtgttgactccaa |
119 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||||| |||||||||||||||| |||||||||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
16057625 |
aaaattaatcgttgcgacgtgttgcggtacttgccaaaacaggggcttccttcttccctaaatcagctatgtatcagggaatgcccaatgttgactccaa |
16057526 |
T |
|
| Q |
120 |
gacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgacaagaaagttgggcaaccttggtatagatattg |
219 |
Q |
| |
|
||||| ||||| ||| ||||| ||| ||| |||||||||| |||||| |||||||||||||| |||||| |||| || |||||| |||||||||| |
|
|
| T |
16057525 |
gacttgaacccaagataggaatgtattggctcaaggtggcttatattcaacatatagaaattgaaaacaagagagtttgggaaccttcttatagatatta |
16057426 |
T |
|
| Q |
220 |
atgaccaaaaag |
231 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
16057425 |
atgagcaaaaag |
16057414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 230
Target Start/End: Complemental strand, 16046256 - 16046046
Alignment:
| Q |
20 |
aaaattgatcgttgcgacgttctgcagtacttgcctgaacaggggcttccttcctccctaaatcagctcaatatcagggattgcccagtgttgactccaa |
119 |
Q |
| |
|
|||||| ||||||||||||| || |||||| || ||||||||||||||||| |||||||||||||| ||||||||| |||||| ||||||||||| |
|
|
| T |
16046256 |
aaaattaatcgttgcgacgtgttgaggtactttccagaacaggggcttccttcttccctaaatcagctatgtatcagggaatgcccaaagttgactccaa |
16046157 |
T |
|
| Q |
120 |
gacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgacaagaaagttgggcaaccttggtatagatattg |
219 |
Q |
| |
|
||||| ||||| ||||||||||||||||| |||| |||||||||| |||||||||||||| ||||||| |||| || |||||| |||||||||| |
|
|
| T |
16046156 |
gacttgaacccaagacaggaaagtactggcacaagatggctcatatctaacatatagaaattgaagacaagagagtttgggaaccttcttatagatatta |
16046057 |
T |
|
| Q |
220 |
atgaccaaaaa |
230 |
Q |
| |
|
|||| |||||| |
|
|
| T |
16046056 |
atgagcaaaaa |
16046046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 16039714 - 16039594
Alignment:
| Q |
20 |
aaaattgatcgttgcgacgttctgcagtacttgcctgaacaggggcttccttcctccctaaatcagctcaatatcagggattgcccagtgttgactccaa |
119 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||||| ||| ||||||||||||| |||| ||||||||| |||| |||| |||||| |||||||||||| |
|
|
| T |
16039714 |
aaaattaatcgttgcgacgtgttgcggtacttgccagaataggggcttccttcttccccaaatcagctatgtatctgggaatgcccaatgttgactccaa |
16039615 |
T |
|
| Q |
120 |
gacttaaacccgagacaggaa |
140 |
Q |
| |
|
||||| ||||| ||| ||||| |
|
|
| T |
16039614 |
gacttgaacccaagataggaa |
16039594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 3915833 - 3915993
Alignment:
| Q |
30 |
gttgcgacgttctgcagtacttgcctgaacaggggcttccttcctccctaaatcagctcaatatcagggattgcccagtgttgactccaagacttaa--- |
126 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||| | |||||||| ||| |||||| ||| |||||| | || | |||||||||| | |
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|
| T |
3915833 |
gttgcgacgtgctgcagtgcttgcctgaacaggggcttccttccactctaaatcaactctatatcaaggaatgcccattttttattccaagacttgatcg |
3915932 |
T |
|
| Q |
127 |
acccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgac |
187 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||| | ||||| |||||||||||| |
|
|
| T |
3915933 |
gcccaagacaggaaagtactggcgcaaggtggctcatatccaacatatcgaaattgatgac |
3915993 |
T |
|
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