View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk450-LTR4-TNT-insertion-3 (Length: 597)

Name: Tnk450-LTR4-TNT-insertion-3
Description: Tnk450-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk450-LTR4-TNT-insertion-3
Tnk450-LTR4-TNT-insertion-3
[»] chr4 (8 HSPs)
chr4 (249-551)||(45644316-45644615)
chr4 (12-196)||(45644146-45644330)
chr4 (552-590)||(36095817-36095855)
chr4 (552-590)||(43051268-43051306)
chr4 (550-590)||(50679440-50679480)
chr4 (555-590)||(47219217-47219252)
chr4 (552-590)||(50678779-50678817)
chr4 (550-590)||(36096491-36096531)
[»] chr5 (4 HSPs)
chr5 (426-548)||(34645243-34645366)
chr5 (552-590)||(11350808-11350846)
chr5 (552-590)||(18816952-18816990)
chr5 (550-590)||(18817627-18817667)
[»] scaffold0328 (2 HSPs)
scaffold0328 (552-590)||(6811-6849)
scaffold0328 (549-590)||(6149-6190)
[»] chr7 (5 HSPs)
chr7 (552-590)||(13863313-13863351)
chr7 (550-590)||(44599487-44599527)
chr7 (552-590)||(13863972-13864010)
chr7 (552-590)||(44600151-44600189)
chr7 (550-590)||(3687672-3687712)
[»] chr2 (5 HSPs)
chr2 (552-590)||(2638820-2638858)
chr2 (552-590)||(2639498-2639536)
chr2 (552-590)||(18296709-18296747)
chr2 (552-590)||(26841587-26841625)
chr2 (550-590)||(26842254-26842294)
[»] chr8 (8 HSPs)
chr8 (550-590)||(3307336-3307376)
chr8 (550-590)||(39724064-39724104)
chr8 (552-590)||(9823377-9823415)
chr8 (552-590)||(13026635-13026673)
chr8 (549-590)||(41662419-41662460)
chr8 (550-590)||(13027297-13027337)
chr8 (550-590)||(22851388-22851428)
chr8 (551-590)||(39723400-39723440)
[»] chr6 (2 HSPs)
chr6 (550-590)||(33828988-33829028)
chr6 (552-590)||(33829652-33829690)
[»] chr1 (4 HSPs)
chr1 (550-590)||(48190769-48190809)
chr1 (552-590)||(49284409-49284447)
chr1 (550-590)||(6002235-6002275)
chr1 (552-588)||(48191373-48191409)
[»] chr3 (1 HSPs)
chr3 (550-590)||(20969035-20969075)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 249 - 551
Target Start/End: Original strand, 45644316 - 45644615
Alignment:
Q  249 agtaactattaagtttattagtaccatactactagtatttcagtaaaagttttcattttgtttcgatttgtgaagatcacttacttaatctatcttttgt 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||| |||||||||||||||    
T  45644316 agtaactattaagtttattagtaccatactactagtatttcagtaaaagttttcattttgt----------gaagatcacttacctaatctatcttttgt 45644405  T
Q  349 accaaa----------gatcacttatctactcggataatagttgtgaatagaatgctaatagaaaataatcaaaaaattactcatactgaattaatacca 438  Q
    ||||||          |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||   ||||||||||||    
T  45644406 accaaaaaaaaaaaaagatcacttatctactcggataatagttgtgaatagaatgctaatagaaaacaatcaaaaaattactcat---gaattaatacca 45644502  T
Q  439 ttaaatgtaattgcatcgaatggaaattacacccccattaaccaaattccattgaaaaactgatcttatcatatcgcactaattcaaaattagtactagt 538  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45644503 ttaaatgtaattgcatcgaatggaaattacaccaccattaaccaaattccattgaaaaactgatcttatcatatcgcactaattcaaaattagtactagt 45644602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 45644146 - 45644330
Alignment:
Q  12 gggcaccaaatttcttcatcctttgtctcatttctcatcaccattcaccataacttccataattgctatgcttcaagatattctcatgaccaatttctaa 111  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45644146 gggcaccaaatttcttcatcctttgtctcatttctaatcaccattcaccataacttccataattgctctgcttcaagatattctcatgaccaatttctaa 45644245  T
Q  112 atgaatcaggttacataaaaagttatccaatctaatcctttatttttaagcaaattaaacgtacataacaagtaactattaagtt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45644246 atgaatcaggttacataaaaagttatccaatctaatcctttatttttaagcaaattaaacgtacataacaagtaactattaagtt 45644330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 552 - 590
Target Start/End: Original strand, 36095817 - 36095855
Alignment:
Q  552 ggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  36095817 ggcttaattgcatttttcacccctatcttttgccaattg 36095855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 552 - 590
Target Start/End: Complemental strand, 43051306 - 43051268
Alignment:
Q  552 ggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  43051306 ggcttaattgcatttttcacccctatcttttgccaattg 43051268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 550 - 590
Target Start/End: Complemental strand, 50679480 - 50679440
Alignment:
Q  550 ttggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  50679480 ttggcttaattgcacttttcacccctatcttttgccaattg 50679440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 555 - 590
Target Start/End: Complemental strand, 47219252 - 47219217
Alignment:
Q  555 ttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||||||||||||||||||||| |||||    
T  47219252 ttaattgcatttttcacctctatcttttgctaattg 47219217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 552 - 590
Target Start/End: Original strand, 50678779 - 50678817
Alignment:
Q  552 ggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  50678779 ggcttaattgcacttttcacccctatcttttgccaattg 50678817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 550 - 590
Target Start/End: Complemental strand, 36096531 - 36096491
Alignment:
Q  550 ttggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||| ||||||||| |||||||| |||||||||||||||||    
T  36096531 ttggtttaattgcacttttcacccctatcttttgccaattg 36096491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 8e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 426 - 548
Target Start/End: Original strand, 34645243 - 34645366
Alignment:
Q  426 tgaattaataccatt-aaatgtaattgcatcgaatggaaattacacccccattaaccaaattccattgaaaaactgatcttatcatatcgcactaattca 524  Q
    |||||| |||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| ||| ||| || |||    
T  34645243 tgaattgataccattcaaatgtaattgcatcgaatggaaattactccaccattaaccaaattccattgaaaatctgatcttatcaaatcccaccaactca 34645342  T
Q  525 aaattagtactagtagaataataa 548  Q
     |||||||||||||| ||||||||    
T  34645343 gaattagtactagtataataataa 34645366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 552 - 590
Target Start/End: Original strand, 11350808 - 11350846
Alignment:
Q  552 ggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  11350808 ggcttaattgcatttttcacccctatcttttgccaattg 11350846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 552 - 590
Target Start/End: Original strand, 18816952 - 18816990
Alignment:
Q  552 ggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  18816952 ggcttaattgcatttttcacccctatcttttgccaattg 18816990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 550 - 590
Target Start/End: Complemental strand, 18817667 - 18817627
Alignment:
Q  550 ttggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  18817667 ttggcttaattgcacttttcacccctatcttttgccaattg 18817627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 552 - 590
Target Start/End: Complemental strand, 6849 - 6811
Alignment:
Q  552 ggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  6849 ggcttaattgcatttttcacccctatcttttgccaattg 6811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 549 - 590
Target Start/End: Original strand, 6149 - 6190
Alignment:
Q  549 gttggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  6149 gttggcttaattgcacttttcacctctatcttttgctaattg 6190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 552 - 590
Target Start/End: Original strand, 13863313 - 13863351
Alignment:
Q  552 ggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  13863313 ggcttaattgcatttttcacccctatcttttgccaattg 13863351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 550 - 590
Target Start/End: Original strand, 44599487 - 44599527
Alignment:
Q  550 ttggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  44599487 ttggcttaattgcacttttcacccctatcttttgccaattg 44599527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 552 - 590
Target Start/End: Complemental strand, 13864010 - 13863972
Alignment:
Q  552 ggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  13864010 ggcttaattgcacttttcacccctatcttttgccaattg 13863972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 552 - 590
Target Start/End: Complemental strand, 44600189 - 44600151
Alignment:
Q  552 ggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  44600189 ggcttaattgcacttttcacccctatcttttgccaattg 44600151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 550 - 590
Target Start/End: Complemental strand, 3687712 - 3687672
Alignment:
Q  550 ttggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||||| ||||| || |||||||||||||||||    
T  3687712 ttggcttaattgcacttttcccccctatcttttgccaattg 3687672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 552 - 590
Target Start/End: Original strand, 2638820 - 2638858
Alignment:
Q  552 ggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  2638820 ggcttaattgcatttttcacccctatcttttgccaattg 2638858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 552 - 590
Target Start/End: Complemental strand, 2639536 - 2639498
Alignment:
Q  552 ggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  2639536 ggcttaattgcacttttcacccctatcttttgccaattg 2639498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 552 - 590
Target Start/End: Complemental strand, 18296747 - 18296709
Alignment:
Q  552 ggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  18296747 ggcttaattgcacttttcacccctatcttttgccaattg 18296709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 552 - 590
Target Start/End: Original strand, 26841587 - 26841625
Alignment:
Q  552 ggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  26841587 ggcttaattgcacttttcacccctatcttttgccaattg 26841625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 550 - 590
Target Start/End: Complemental strand, 26842294 - 26842254
Alignment:
Q  550 ttggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    ||||||||| |||| |||||||| |||||||||||||||||    
T  26842294 ttggcttaagtgcacttttcacccctatcttttgccaattg 26842254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 550 - 590
Target Start/End: Original strand, 3307336 - 3307376
Alignment:
Q  550 ttggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  3307336 ttggcttaattgcatttttcacccctatcttttgtcaattg 3307376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 550 - 590
Target Start/End: Complemental strand, 39724104 - 39724064
Alignment:
Q  550 ttggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  39724104 ttggcttaattgcacttttcacccctatcttttgccaattg 39724064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 552 - 590
Target Start/End: Complemental strand, 9823415 - 9823377
Alignment:
Q  552 ggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  9823415 ggcttaattgcacttttcacccctatcttttgccaattg 9823377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 552 - 590
Target Start/End: Original strand, 13026635 - 13026673
Alignment:
Q  552 ggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  13026635 ggcttaattgcacttttcacccctatcttttgccaattg 13026673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 590
Target Start/End: Complemental strand, 41662460 - 41662419
Alignment:
Q  549 gttggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    ||||||||||||||| ||||| || |||||||||||||||||    
T  41662460 gttggcttaattgcacttttcccccctatcttttgccaattg 41662419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 550 - 590
Target Start/End: Complemental strand, 13027337 - 13027297
Alignment:
Q  550 ttggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||| ||||||||| |||||||| |||||||||||||||||    
T  13027337 ttggtttaattgcacttttcacccctatcttttgccaattg 13027297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 550 - 590
Target Start/End: Original strand, 22851388 - 22851428
Alignment:
Q  550 ttggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||||| |||||||| |||||||||| ||||||    
T  22851388 ttggcttaattgcacttttcacccctatcttttgtcaattg 22851428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 551 - 590
Target Start/End: Original strand, 39723400 - 39723440
Alignment:
Q  551 tggcttaattgca-tttttcacctctatcttttgccaattg 590  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  39723400 tggcttaattgtaatttttcacctctatcttttgccaattg 39723440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 550 - 590
Target Start/End: Original strand, 33828988 - 33829028
Alignment:
Q  550 ttggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  33828988 ttggcttaattgcacttttcacccctatcttttgccaattg 33829028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 552 - 590
Target Start/End: Complemental strand, 33829690 - 33829652
Alignment:
Q  552 ggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  33829690 ggcttaattgcacttttcacccctatcttttgccaattg 33829652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 550 - 590
Target Start/End: Original strand, 48190769 - 48190809
Alignment:
Q  550 ttggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  48190769 ttggcttaattgcacttttcacccctatcttttgccaattg 48190809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 552 - 590
Target Start/End: Original strand, 49284409 - 49284447
Alignment:
Q  552 ggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  49284409 ggcttaattgcacttttcacccctatcttttgccaattg 49284447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 550 - 590
Target Start/End: Original strand, 6002235 - 6002275
Alignment:
Q  550 ttggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||||| |||||||| |||||||||| ||||||    
T  6002235 ttggcttaattgcacttttcacccctatcttttgtcaattg 6002275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 552 - 588
Target Start/End: Complemental strand, 48191409 - 48191373
Alignment:
Q  552 ggcttaattgcatttttcacctctatcttttgccaat 588  Q
    |||||||||||| |||||||| |||||||||||||||    
T  48191409 ggcttaattgcacttttcacccctatcttttgccaat 48191373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 550 - 590
Target Start/End: Complemental strand, 20969075 - 20969035
Alignment:
Q  550 ttggcttaattgcatttttcacctctatcttttgccaattg 590  Q
    |||||||||||||| ||||| || |||||||||||||||||    
T  20969075 ttggcttaattgcacttttcccccctatcttttgccaattg 20969035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University