View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk450-LTR4-TNT-insertion-4 (Length: 76)

Name: Tnk450-LTR4-TNT-insertion-4
Description: Tnk450-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk450-LTR4-TNT-insertion-4
Tnk450-LTR4-TNT-insertion-4
[»] chr8 (5 HSPs)
chr8 (25-55)||(5449510-5449540)
chr8 (25-55)||(17833952-17833982)
chr8 (25-55)||(38044957-38044987)
chr8 (25-55)||(38194675-38194705)
chr8 (25-54)||(44052915-44052944)
[»] chr7 (8 HSPs)
chr7 (25-55)||(9417811-9417841)
chr7 (25-55)||(37115775-37115805)
chr7 (25-55)||(38510118-38510148)
chr7 (25-55)||(39961092-39961122)
chr7 (25-55)||(43884334-43884364)
chr7 (27-55)||(5114069-5114097)
chr7 (25-66)||(16875858-16875901)
chr7 (25-52)||(12263693-12263720)
[»] chr6 (5 HSPs)
chr6 (25-55)||(6850053-6850083)
chr6 (25-55)||(20605612-20605642)
chr6 (25-55)||(31022595-31022625)
chr6 (25-55)||(33254377-33254407)
chr6 (25-66)||(4148266-4148309)
[»] chr5 (3 HSPs)
chr5 (25-55)||(20656467-20656497)
chr5 (25-55)||(27807949-27807979)
chr5 (25-52)||(8050431-8050458)
[»] chr4 (4 HSPs)
chr4 (25-55)||(34002214-34002244)
chr4 (25-55)||(38615265-38615295)
chr4 (25-55)||(52397900-52397930)
chr4 (28-55)||(30609276-30609303)
[»] chr3 (7 HSPs)
chr3 (25-55)||(27942223-27942253)
chr3 (25-55)||(39290579-39290609)
chr3 (25-55)||(41979918-41979948)
chr3 (25-55)||(44035185-44035215)
chr3 (25-55)||(45218760-45218790)
chr3 (25-55)||(49384130-49384160)
chr3 (25-54)||(3645915-3645944)
[»] chr2 (10 HSPs)
chr2 (25-55)||(5669215-5669245)
chr2 (25-55)||(8059854-8059884)
chr2 (25-55)||(28181696-28181726)
chr2 (25-55)||(31909784-31909814)
chr2 (25-55)||(34504384-34504414)
chr2 (25-55)||(37985566-37985596)
chr2 (25-55)||(38993530-38993560)
chr2 (25-55)||(43521602-43521632)
chr2 (25-54)||(28786933-28786962)
chr2 (28-55)||(14833004-14833031)
[»] chr1 (8 HSPs)
chr1 (25-55)||(8768657-8768687)
chr1 (25-55)||(26541230-26541260)
chr1 (25-55)||(42643151-42643181)
chr1 (25-55)||(49419569-49419599)
chr1 (25-54)||(16128753-16128782)
chr1 (26-55)||(31809514-31809543)
chr1 (25-54)||(34022381-34022410)
chr1 (25-52)||(52701878-52701905)


Alignment Details
Target: chr8 (Bit Score: 31; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 5449540 - 5449510
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  5449540 ttgtcctaaattatatgtcgctttacaatac 5449510  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 17833952 - 17833982
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  17833952 ttgtcctaaattatatgtcgctttacaatac 17833982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 38044957 - 38044987
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  38044957 ttgtcctaaattatatgtcgctttacaatac 38044987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 38194705 - 38194675
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  38194705 ttgtcctaaattatatgtcgctttacaatac 38194675  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 44052915 - 44052944
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaata 54  Q
    ||||||||||||||||||||||||||||||    
T  44052915 ttgtcctaaattatatgtcgctttacaata 44052944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 9417841 - 9417811
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  9417841 ttgtcctaaattatatgtcgctttacaatac 9417811  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 37115775 - 37115805
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  37115775 ttgtcctaaattatatgtcgctttacaatac 37115805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 38510148 - 38510118
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  38510148 ttgtcctaaattatatgtcgctttacaatac 38510118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 39961122 - 39961092
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  39961122 ttgtcctaaattatatgtcgctttacaatac 39961092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 43884364 - 43884334
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  43884364 ttgtcctaaattatatgtcgctttacaatac 43884334  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 5114097 - 5114069
Alignment:
Q  27 gtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||    
T  5114097 gtcctaaattatatgtcgctttacaatac 5114069  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 16875901 - 16875858
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac--gtgcaacatta 66  Q
    ||||| |||||||||||||||||||||||||  |||||||||||    
T  16875901 ttgtcataaattatatgtcgctttacaataccagtgcaacatta 16875858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 52
Target Start/End: Original strand, 12263693 - 12263720
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaa 52  Q
    ||||||||||||||||||||||||||||    
T  12263693 ttgtcctaaattatatgtcgctttacaa 12263720  T

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Target: chr6 (Bit Score: 31; Significance: 0.000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 6850053 - 6850083
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  6850053 ttgtcctaaattatatgtcgctttacaatac 6850083  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 20605612 - 20605642
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  20605612 ttgtcctaaattatatgtcgctttacaatac 20605642  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 31022625 - 31022595
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  31022625 ttgtcctaaattatatgtcgctttacaatac 31022595  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 33254377 - 33254407
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  33254377 ttgtcctaaattatatgtcgctttacaatac 33254407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 4148309 - 4148266
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatacg--tgcaacatta 66  Q
    |||||| |||||||||||||||||||||||||  ||||||||||    
T  4148309 ttgtcccaaattatatgtcgctttacaatacgaatgcaacatta 4148266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 20656497 - 20656467
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  20656497 ttgtcctaaattatatgtcgctttacaatac 20656467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 27807979 - 27807949
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  27807979 ttgtcctaaattatatgtcgctttacaatac 27807949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 52
Target Start/End: Original strand, 8050431 - 8050458
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaa 52  Q
    ||||||||||||||||||||||||||||    
T  8050431 ttgtcctaaattatatgtcgctttacaa 8050458  T

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Target: chr4 (Bit Score: 31; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 34002214 - 34002244
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  34002214 ttgtcctaaattatatgtcgctttacaatac 34002244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 38615295 - 38615265
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  38615295 ttgtcctaaattatatgtcgctttacaatac 38615265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 52397930 - 52397900
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  52397930 ttgtcctaaattatatgtcgctttacaatac 52397900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 55
Target Start/End: Original strand, 30609276 - 30609303
Alignment:
Q  28 tcctaaattatatgtcgctttacaatac 55  Q
    ||||||||||||||||||||||||||||    
T  30609276 tcctaaattatatgtcgctttacaatac 30609303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 27942253 - 27942223
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  27942253 ttgtcctaaattatatgtcgctttacaatac 27942223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 39290579 - 39290609
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  39290579 ttgtcctaaattatatgtcgctttacaatac 39290609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 41979918 - 41979948
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  41979918 ttgtcctaaattatatgtcgctttacaatac 41979948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 44035185 - 44035215
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  44035185 ttgtcctaaattatatgtcgctttacaatac 44035215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 45218760 - 45218790
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  45218760 ttgtcctaaattatatgtcgctttacaatac 45218790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 49384130 - 49384160
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  49384130 ttgtcctaaattatatgtcgctttacaatac 49384160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 3645944 - 3645915
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaata 54  Q
    ||||||||||||||||||||||||||||||    
T  3645944 ttgtcctaaattatatgtcgctttacaata 3645915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.000000005; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 5669245 - 5669215
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  5669245 ttgtcctaaattatatgtcgctttacaatac 5669215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 8059854 - 8059884
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  8059854 ttgtcctaaattatatgtcgctttacaatac 8059884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 28181726 - 28181696
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  28181726 ttgtcctaaattatatgtcgctttacaatac 28181696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 31909814 - 31909784
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  31909814 ttgtcctaaattatatgtcgctttacaatac 31909784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 34504384 - 34504414
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  34504384 ttgtcctaaattatatgtcgctttacaatac 34504414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 37985566 - 37985596
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  37985566 ttgtcctaaattatatgtcgctttacaatac 37985596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 38993530 - 38993560
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  38993530 ttgtcctaaattatatgtcgctttacaatac 38993560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 43521632 - 43521602
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  43521632 ttgtcctaaattatatgtcgctttacaatac 43521602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 28786962 - 28786933
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaata 54  Q
    ||||||||||||||||||||||||||||||    
T  28786962 ttgtcctaaattatatgtcgctttacaata 28786933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 55
Target Start/End: Original strand, 14833004 - 14833031
Alignment:
Q  28 tcctaaattatatgtcgctttacaatac 55  Q
    ||||||||||||||||||||||||||||    
T  14833004 tcctaaattatatgtcgctttacaatac 14833031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 8768687 - 8768657
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  8768687 ttgtcctaaattatatgtcgctttacaatac 8768657  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 26541260 - 26541230
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  26541260 ttgtcctaaattatatgtcgctttacaatac 26541230  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 42643151 - 42643181
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  42643151 ttgtcctaaattatatgtcgctttacaatac 42643181  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 49419599 - 49419569
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaatac 55  Q
    |||||||||||||||||||||||||||||||    
T  49419599 ttgtcctaaattatatgtcgctttacaatac 49419569  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 16128782 - 16128753
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaata 54  Q
    ||||||||||||||||||||||||||||||    
T  16128782 ttgtcctaaattatatgtcgctttacaata 16128753  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 31809514 - 31809543
Alignment:
Q  26 tgtcctaaattatatgtcgctttacaatac 55  Q
    ||||||||||||||||||||||||||||||    
T  31809514 tgtcctaaattatatgtcgctttacaatac 31809543  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 34022410 - 34022381
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaata 54  Q
    ||||||||||||||||||||||||||||||    
T  34022410 ttgtcctaaattatatgtcgctttacaata 34022381  T

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Target: chr1; HSP #8
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 52
Target Start/End: Complemental strand, 52701905 - 52701878
Alignment:
Q  25 ttgtcctaaattatatgtcgctttacaa 52  Q
    ||||||||||||||||||||||||||||    
T  52701905 ttgtcctaaattatatgtcgctttacaa 52701878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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