View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk450-LTR4-TNT-insertion-5 (Length: 129)
Name: Tnk450-LTR4-TNT-insertion-5
Description: Tnk450-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk450-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 7e-50; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 7e-50
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 7804439 - 7804320
Alignment:
| Q |
2 |
ccaacacattaaactaacaacttgcaaaaattttatatatatcgacaaaaaactaacagctggcaaaatgagagacaaacttttacggtttagttgtagt |
101 |
Q |
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| T |
7804439 |
ccaaaacattaaactaacaacttgcaaaaaatttatatatatcaacaaaaaactaacagctggcaaaatgagaaacaaatttttacggtttagttgtagt |
7804340 |
T |
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| Q |
102 |
atctaaccatgtgtacatta |
121 |
Q |
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|||||||||||||||||||| |
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| T |
7804339 |
atctaaccatgtgtacatta |
7804320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 7833836 - 7833715
Alignment:
| Q |
2 |
ccaacacattaaactaacaacttgcaaaaattttatatatat--cgacaaaaaactaacagctggcaaaatgagagacaaacttttacggtttagttgta |
99 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
7833836 |
ccaaaacattaaactaacaacttgcaaaaaatttatatatatatcaacaaaaaactaacagctgggaaaatgagagacaaatttttacggtttagttgta |
7833737 |
T |
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| Q |
100 |
gtatctaaccatgtgtacatta |
121 |
Q |
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|||||||||||||||||||||| |
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| T |
7833736 |
gtatctaaccatgtgtacatta |
7833715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 6e-41
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 7784373 - 7784253
Alignment:
| Q |
2 |
ccaacacattaaactaacaacttgcaaaaat-tttatatatatcgacaaaaaactaacagctggcaaaatgagagacaaacttttacggtttagttgtag |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||| |
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| T |
7784373 |
ccaaaacattaaactaacaacttgcaaaaaaatttatatatatcaacaaaaaactaacaactggaaaaatgagaaacaaatttttacggtttagttgtag |
7784274 |
T |
|
| Q |
101 |
tatctaaccatgtgtacatta |
121 |
Q |
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||||||||||||||||||||| |
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| T |
7784273 |
tatctaaccatgtgtacatta |
7784253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 16039914 - 16039860
Alignment:
| Q |
50 |
aaaactaacagctggcaaaatgagagacaaacttttacggtttagttgtagtatc |
104 |
Q |
| |
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|||| ||||||||| |||||||||||||||| ||||| |||||||||| |||||| |
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| T |
16039914 |
aaaagtaacagctgacaaaatgagagacaaatttttagggtttagttgcagtatc |
16039860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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