View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Tnk450-LTR4-TNT-insertion-7 (Length: 124)
Name: Tnk450-LTR4-TNT-insertion-7
Description: Tnk450-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk450-LTR4-TNT-insertion-7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 59; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 27571808 - 27571866
Alignment:
| Q |
8 |
ctagatcatgctaatggagatttagatagattagttgaagctaattactatagaaacca |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27571808 |
ctagatcatgctaatggagatttagatagattagttgaagctaattactatagaaacca |
27571866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 27567445 - 27567485
Alignment:
| Q |
13 |
tcatgctaatggagatttagatagattagttgaagctaatt |
53 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||| ||||||| |
|
|
| T |
27567445 |
tcatgcaaatggagatttagatagaatagttgaggctaatt |
27567485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University