View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Tnk450-LTR4-TNT-insertion-8 (Length: 176)
Name: Tnk450-LTR4-TNT-insertion-8
Description: Tnk450-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk450-LTR4-TNT-insertion-8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 112; Significance: 7e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 7e-57
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 28963500 - 28963660
Alignment:
| Q |
8 |
gtatgcaccaaccaataattatactactaccactattcctnnnnnnnnnnnnnnntcaaagaattaataatttctcagtttcttttttgaagaaaaataa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28963500 |
gtatgcaccaaccaataattatactactactactattcctaaaaaaaaataaaaatcaaagaattaataatttctcagtttcttttttgaagaaaaataa |
28963599 |
T |
|
| Q |
108 |
tttctcagttattcgtcgtgtttatttaacacaatttacacctcttttgtcacgtcgaatt |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28963600 |
tttctcagttattcgtcgtgtttatttaacacaatttacacctcttttgtcacgtcgaatt |
28963660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 6e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 6e-51
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 34834862 - 34834967
Alignment:
| Q |
63 |
tcaaagaattaataatttctcagtttcttttttgaagaaaaataatttctcagttattcgtcgtgtttatttaacacaatttacacctcttttgtcacgt |
162 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34834862 |
tcaaagaattaataatttttcagtttcttttttgaagaaaaataatttctcagttattcgtcgtgtttatttaacacaatttacacctcttttgtcacgt |
34834961 |
T |
|
| Q |
163 |
cgaatt |
168 |
Q |
| |
|
|||||| |
|
|
| T |
34834962 |
cgaatt |
34834967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 34834812 - 34834841
Alignment:
| Q |
8 |
gtatgcaccaaccaataattatactactac |
37 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34834812 |
gtatgcaccaaccaataattatactactac |
34834841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University