View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-10-LTR4-TNT-insertion-10 (Length: 151)
Name: Tnk88-10-LTR4-TNT-insertion-10
Description: Tnk88-10-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-10-LTR4-TNT-insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 1e-70; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 30043254 - 30043388
Alignment:
| Q |
8 |
ctgagctcttggtatagtgagtccaaatttctcctccatattcaaattggagggactaatattatgtggaagttcccagttaaaacaatggataaattga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30043254 |
ctgagctcttggtatagtgagtccaaatttctcctccatattcaaattggagggactaatattatgtggaagttcccagttaaaacaatggataaattga |
30043353 |
T |
|
| Q |
108 |
gctataaccaatttaacagtaattaaacccaattg |
142 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
30043354 |
gctataaccaatttaacagtaattaaacccaattg |
30043388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 30007744 - 30007610
Alignment:
| Q |
8 |
ctgagctcttggtatagtgagtccaaatttctcctccatattcaaattggagggactaatattatgtggaagttcccagttaaaacaatggataaattga |
107 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||| |
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| T |
30007744 |
ctgagctcttggtatagagagtccaaatttctcctccatattcaaattggaaggactaatattatgtggaagttcccagttaaagcaatgcacaaattga |
30007645 |
T |
|
| Q |
108 |
gctataaccaatttaacagtaattaaacccaattg |
142 |
Q |
| |
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||||||||||| ||||| |||||||||||||||| |
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| T |
30007644 |
gctataaccaacttaacgataattaaacccaattg |
30007610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 30001628 - 30001494
Alignment:
| Q |
8 |
ctgagctcttggtatagtgagtccaaatttctcctccatattcaaattggagggactaatattatgtggaagttcccagttaaaacaatggataaattga |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||| |
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| T |
30001628 |
ctgagctcttggtatagtgagtccaaatttctcctccatattcaaattggaaggactaatattatgtggaagttcccagttaaagcaatgcacgaattga |
30001529 |
T |
|
| Q |
108 |
gctataaccaatttaacagtaattaaacccaattg |
142 |
Q |
| |
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||||||||||| ||||| ||||| | ||||||||| |
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| T |
30001528 |
gctataaccaacttaaccgtaatcatacccaattg |
30001494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 30067771 - 30067905
Alignment:
| Q |
8 |
ctgagctcttggtatagtgagtccaaatttctcctccatattcaaattggagggactaatattatgtggaagttcccagttaaaacaatggataaattga |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| ||||| ||||| | ||||||| |
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| T |
30067771 |
ctgagctcttggtatagtgagtccaaatttctcctccatattcaaattgaatggactaatattatgtgaaagttcccaattaaagcaatgcacaaattga |
30067870 |
T |
|
| Q |
108 |
gctataaccaatttaacagtaattaaacccaattg |
142 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| |
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| T |
30067871 |
gctataaccaacttaacagtagttaaacccaattg |
30067905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 29995953 - 29995820
Alignment:
| Q |
9 |
tgagctcttggtatagtgagtccaaatttctcctccatattcaaattggagggactaatattatgtggaagttcccagttaaaacaatggataaattgag |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||| | || | |||||||||||||||||||||||| ||||| ||||| | |||||||| |
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| T |
29995953 |
tgagttcttggtatagtgagtccaaatttttcctccatattcaaactagaagaactaatattatgtggaagttcccaattaaagcaatgcacaaattgag |
29995854 |
T |
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| Q |
109 |
ctataaccaatttaacagtaattaaacccaattg |
142 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| |
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| T |
29995853 |
ctataaccaacttaatcgtaattaaacccaattg |
29995820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 29954195 - 29954062
Alignment:
| Q |
9 |
tgagctcttggtatagtgagtccaaatttctcctccatattcaaattggagggactaatattatgtggaagttcccagttaaaacaatggataaattgag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| | ||||||||| | ||||| | |
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| T |
29954195 |
tgagctcttggtatagtgagtccaaatttctcctccatattcaaattggaaggactgatattatatggaagttcccaatcaaaacaatgcaccaattggg |
29954096 |
T |
|
| Q |
109 |
ctataaccaatttaacagtaattaaacccaattg |
142 |
Q |
| |
|
| |||||||| ||||| || | ||||||| |||| |
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| T |
29954095 |
caataaccaacttaacggtcactaaacccgattg |
29954062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 29965463 - 29965330
Alignment:
| Q |
9 |
tgagctcttggtatagtgagtccaaatttctcctccatattcaaattggagggactaatattatgtggaagttcccagttaaaacaatggataaattgag |
108 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||| | ||||||| |
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| T |
29965463 |
tgagcccttggtatagtgactccaaatttctcttccatattcaaattggaagggctaatattatgtggaagttcccaattaaagcaatgcaccaattgag |
29965364 |
T |
|
| Q |
109 |
ctataaccaatttaacagtaattaaacccaattg |
142 |
Q |
| |
|
||| ||| ||| |||| |||| ||||||||||| |
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|
| T |
29965363 |
ctacaacaaatctaaccgtaaccaaacccaattg |
29965330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 30009335 - 30009468
Alignment:
| Q |
9 |
tgagctcttggtatagtgagtccaaatttctcctccatattcaaattggagggactaatattatgtggaagttcccagttaaaacaatggataaattgag |
108 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||| | ||||||| |
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| T |
30009335 |
tgagcccttggtatagtgactccaaatttctcttccatattcaaattggaagggctaatattatgtggaagttcccaattaaagcaatgcaccaattgag |
30009434 |
T |
|
| Q |
109 |
ctataaccaatttaacagtaattaaacccaattg |
142 |
Q |
| |
|
||| ||| ||| |||| |||| ||||||||||| |
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|
| T |
30009435 |
ctacaacaaatctaaccgtaaccaaacccaattg |
30009468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 29947211 - 29947120
Alignment:
| Q |
32 |
aaatttctcctccatattcaaattggagggactaatattatgtggaagttcccagttaaaacaatggataaattgagctataaccaatttaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||| ||||| | |||||||||||||||| ||||| |
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|
| T |
29947211 |
aaatttctcctccatattcaaattggaaggactaatattacatggaagttcccaattaaagcaatgtaccaattgagctataaccattttaa |
29947120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 29945243 - 29945159
Alignment:
| Q |
28 |
gtccaaatttctcctccatattcaaattggagggactaatattatgtggaagttcccagttaaaacaatggataaattgagctat |
112 |
Q |
| |
|
||||||||||||| ||||| |||||||| || ||||||||||||| |||||||| ||| ||||| ||||| | ||||||||||| |
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| T |
29945243 |
gtccaaatttctcatccatgttcaaattagaaggactaatattatatggaagtttccaattaaagcaatgcaccaattgagctat |
29945159 |
T |
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