View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-10-LTR4-TNT-insertion-2 (Length: 163)
Name: Tnk88-10-LTR4-TNT-insertion-2
Description: Tnk88-10-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-10-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 81; Significance: 2e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 9174384 - 9174285
Alignment:
| Q |
9 |
ataattataaacatatacacccagctactctgtatcatgccaagtgccaactagtctataaattgtttgtatcatgccgactattcccagctattatagc |
108 |
Q |
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| T |
9174384 |
ataattataaacatatacacccagctactctgtatcatgccaa-------ctagtctataaattgtttgtatcatgccgactattcccagctattatagc |
9174292 |
T |
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