View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk88-10-LTR4-TNT-insertion-5 (Length: 766)

Name: Tnk88-10-LTR4-TNT-insertion-5
Description: Tnk88-10-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk88-10-LTR4-TNT-insertion-5
Tnk88-10-LTR4-TNT-insertion-5
[»] chr3 (1 HSPs)
chr3 (10-766)||(43756151-43756896)


Alignment Details
Target: chr3 (Bit Score: 672; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 10 - 766
Target Start/End: Original strand, 43756151 - 43756896
Alignment:
Q  10 aatttgcaaagggattgaagcctttggggtttataaatcttatttaaggttagcttcaatactttctgttatgccttttgattttctcaatttctcaatt 109  Q
    |||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43756151 aatttgcaaagggattgaagccgtgggggtttataaatcttatttgaggttagcttcaatactttctgttatgccttttgattttctcaatttctcaatt 43756250  T
Q  110 ctctattttgtgaataccaatttttatttgtatatgtaaacttctgtagtgcttggaaaactttcacatgcactttctgtgcttgtctcccccttactgt 209  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43756251 ctctattttgtgaataccaatttttatctgtatatgtaaacttctgtagtgcttggaaaactttcacatgcactttctgtgcttgtctcccccttactgt 43756350  T
Q  210 gttgattctttgtttgtttttctcggattaaagcaaatatggaaaataaaatctttataatagtgcaatccactattttctagagcaggatcacat--ta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  43756351 gttgattctttgtttgtttttctcggattaaagcaaatatggaaaataaaatctttataatagtgcaatccactattttctagagcaggatcacatgata 43756450  T
Q  308 tatcatgtttccttcgtcatattttcctttaatttctagctttgtgatgcaaacaaattgcattattgtcaagcagaatgcgacctaagatagtagaaaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43756451 tatcatgtttccttcgtcatattttcctttaatttctagctttgtgatgcaaacaaattgcattattgtcaagcagaatgcgacctaagatagtagaaaa 43756550  T
Q  408 atcaaaagtagtgcttgtcattaccaaacaccaaataattcacatacgatatagtagtactataattagcgattaaaatgtgctatcacacactgttata 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  43756551 atcaaaagtagtgcttgtcattaccaaacaccaaataattcacatacgatatagtagtactataattagcgattaaaatgtgctatcacac--------- 43756641  T
Q  508 tatgacaggtggaattattcaatcctcattctgttattttttagtaaattgttttgggtttttaatacgcaaatgcgacattgagtttggtcaattacag 607  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43756642 ----acaggtggaattattcaatcctcattctgttattttttagtaaattgttttgggtttttaatacgcaaatgcgacattgagtttggtcaattacag 43756737  T
Q  608 tgtttacaggctttttcacattgtcaagtcagaataaaagtatgaaacatgtatgtgacaattctcacagtagtaatagcctgcaactggcggctgtgtt 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43756738 tgtttacaggctttttcacattgtcaagtcagaataaaagtatgaaacatgtatgtgacaattctcatagtagtaatagcctgcaactggcggctgtgtt 43756837  T
Q  708 ggataaatttataggttaagcataagctgttttttcagtttggaaatcaattttgttct 766  Q
    |||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||    
T  43756838 ggataaatttctaggttaagcataagctgtttttcaagtttggaaatcaattttgttct 43756896  T

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