View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-10-LTR4-TNT-insertion-6 (Length: 243)
Name: Tnk88-10-LTR4-TNT-insertion-6
Description: Tnk88-10-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-10-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 37136900 - 37136673
Alignment:
| Q |
9 |
gaatttcccataaaattaccatcaactccactagcataagatgaagcaggagtttcagaatcatacagagatcctgcattgaatccatgatgttcaaagc |
108 |
Q |
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| T |
37136900 |
gaatttcccataaaattaccatcaacgccactagcataagatgaagcaggagttttagaatcatacagagatcctgcattgaatccatgatgttcaaagc |
37136801 |
T |
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| Q |
109 |
tcaaattttcagagtattggtaatcatgtgaatcacttggaggagtaaaattctggttgaaaagatttg---atgaagatggataaggtgaaagtgaagg |
205 |
Q |
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| T |
37136800 |
tcaaattttcagagtattggtaatcatgtgaatcacttggaggagtaaaattctggttgaaaagatttgatgatgaagatggataaggtgaaagtgaagg |
37136701 |
T |
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| Q |
206 |
tgatttttgcaaagcaagagtttcatta |
233 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
37136700 |
tgatttttgcaaagcaagagtttcatta |
37136673 |
T |
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