View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-10-LTR4-TNT-insertion-8 (Length: 266)
Name: Tnk88-10-LTR4-TNT-insertion-8
Description: Tnk88-10-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-10-LTR4-TNT-insertion-8 |
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| [»] scaffold0251 (1 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 258
Target Start/End: Complemental strand, 37789363 - 37789115
Alignment:
| Q |
10 |
tagtgttgataagttgatacctattacccagtttttcatgaagtttgatgataagctcttcctcttgttgattaaagttccctcttttgacatctgacct |
109 |
Q |
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| T |
37789363 |
tagtgttgataagttgatacctattacccagtttttcatgaagtttgatgataagctcttcctcttgttgattgaagttccctcttttgacatctggcct |
37789264 |
T |
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| Q |
110 |
tagatagttcatccaccttagtctacaactcttaccacacctttcaagccctgaaaacaattctctcgagtttaaaggattgaattacaaagatagaaga |
209 |
Q |
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| T |
37789263 |
tagatagttcatccaccttagtctacaactcttaccacacctttcaagccctgaaaacaattctctcgagtttaaaggtttgaattacaaagatagaaga |
37789164 |
T |
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| Q |
210 |
aaaccaatttacacattaatattaagaatagttttccttatggagaatt |
258 |
Q |
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| T |
37789163 |
aaaccaatttacacattaatattaagaatagttttccttatggagaatt |
37789115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 37808008 - 37807866
Alignment:
| Q |
27 |
tacctattacccagtttttcatgaagtttgatgataagctcttcctcttgttgattaaagttccctcttttgacatctgaccttagatagttcatccacc |
126 |
Q |
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| T |
37808008 |
tacctattacccaatttttcatgaagtttgatgatagtctcttcttcttcatgactaaagctccctcttttgatatctggccttagatagttcaaccacc |
37807909 |
T |
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| Q |
127 |
ttagtctacaactcttaccacacctttcaagccctgaaaacaa |
169 |
Q |
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| T |
37807908 |
ttagtctacaactcttcccacacctttcaagacctgcaaacaa |
37807866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 9949 - 9870
Alignment:
| Q |
72 |
tcttgttgattaaagttccctcttttgacatctgaccttagatagttcatccaccttagtctacaactcttaccacacct |
151 |
Q |
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| T |
9949 |
tcttcttgagtaaagtttcctcttttgatattaggccttagataattcaaccacctcaatctacaactcttcccacacct |
9870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 262026 - 262109
Alignment:
| Q |
82 |
taaagttccctcttttgacatctgaccttagatagttcatccaccttagtctacaactcttaccacacctttcaagccctgaaa |
165 |
Q |
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| T |
262026 |
taaagttccctcttctgatattaggccttagataattcagccacctcaatctacaactcttcccacaccttgaaagacctgaaa |
262109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 2590865 - 2590831
Alignment:
| Q |
132 |
ctacaactcttaccacacctttcaagccctgaaaa |
166 |
Q |
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| T |
2590865 |
ctacaactcttaccacacctttgaagccctgaaaa |
2590831 |
T |
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