View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-16-LTR4-TNT-insertion-10 (Length: 750)
Name: Tnk88-16-LTR4-TNT-insertion-10
Description: Tnk88-16-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-16-LTR4-TNT-insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 10 - 740
Target Start/End: Original strand, 14476343 - 14477098
Alignment:
| Q |
10 |
ggaaagtttggaagcagattgtgggtcaacgccaaaattgttgatgaggtaggagacagcaaaagaggttgaatctgaagtgttggtgcaaaaatggaga |
109 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14476343 |
ggaaagtttggaagcagattgtgggtcaaagccaaaattgttgatgaggtaggagacagcaaaagaggttgaatctgaagtgttggtgcaaaaatggaga |
14476442 |
T |
|
| Q |
110 |
ggaaatggtaatgggcaatggtggaaaagagggttagggtttagaagggttgtcgttgttctgtgtcgccatagtatattcttaaacatgatgatgataa |
209 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14476443 |
ggaaagggtaatgggcaatggtggaaaagagggttagggtttagaagg------gttgttctgtgtcgccatagtatattcttaaacatgatgatgataa |
14476536 |
T |
|
| Q |
210 |
atattactactag---attatagatagatagattgtcaattgagtttaacgaaagcttctaatnnnnnnnnnnnnncatgaatgaaaatataacctgtgt |
306 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14476537 |
atattactactagattattatagatagatagattgtcaattgagtttaacgaaagcttctaataaaaaataaaaaacatgaatgaaaatataacctgtgt |
14476636 |
T |
|
| Q |
307 |
tgggtagggaacataataatggtcccaaaattctgtttccacttcctgctttcgcaacaggatgatgagagaaagacgaaggagggactgcttgtatttt |
406 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
14476637 |
tgggtagggaacataataatggtcccaaaattatgtttccacttcctgctttcgcaacaggatgacgagagaaagacgaaggagggactacttgtatttt |
14476736 |
T |
|
| Q |
407 |
cgttggt-attctctgccc--ggaaatgcatggactaatctttcaattattgtaggactcaaatggacggcaaagtagttttaatgttgctgcatgccca |
503 |
Q |
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| T |
14476737 |
cgttggtaattctatgtccgtgcaactgccgagattaatccttcaattattgtaggactcaaatggacggcaaagtcgttttaacgttgctgcatgccca |
14476836 |
T |
|
| Q |
504 |
agagcggattcgaattcaggatcttggttaatc-------tatctcatttgagcgc---------tgacttttagttttagaaaatacactcnnnnnnnn |
587 |
Q |
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| | | ||||||| |||| ||||||| ||| | ||||||||||| |||| ||| || |||||||||||||||||||| |
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| T |
14476837 |
aaattgaattcgaactcagaatcttgggtaacctaaaagatatctcatttgggcgctcttgtgtatgagttgtagttttagaaaatacactc-ttttttt |
14476935 |
T |
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| Q |
588 |
acataaaaagacttgtaatattttattgatgataatgtttcgaatacatgttgaaatttcatcaaagatatgaaaattaactaaagatgtgaccatacat |
687 |
Q |
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| T |
14476936 |
acataaaaagacttgtaatattttgataatgataatgtttcgaatacatgttgaaatttcatcaaagatatgagaattaactaaagatgtgaccatacat |
14477035 |
T |
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| Q |
688 |
tctaaagtatgaaca----------atcacccgtaatgatgagattttcctcgataataatat |
740 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
14477036 |
tctaaagtatgaacaacctcattagatcacccctaatgatgagattttcctcgataataatat |
14477098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 14502025 - 14501915
Alignment:
| Q |
14 |
agtttggaagcagattgtgggtcaacgccaaaattgttgatgaggtaggagacagcaaaagaggttgaatctgaagtgttggtgcaaaaatggagaggaa |
113 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||| |||| || |
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| T |
14502025 |
agtttggaagcaaattgtgggtcaaagccaaaattgttgatgaggtatgagacagaaaatgaggttgaatctgaagtgttggtgcagaaatgaagagaaa |
14501926 |
T |
|
| Q |
114 |
atggtaatggg |
124 |
Q |
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||||||||||| |
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| T |
14501925 |
atggtaatggg |
14501915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 14494538 - 14494405
Alignment:
| Q |
14 |
agtttggaagcagattgtgggtcaacgccaaaattgttgatgaggtaggagacagcaaaagaggttgaatctgaagtgttggtgcaaaaatggagaggaa |
113 |
Q |
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||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||||| || |
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| T |
14494538 |
agtttggaagcagattgtgggtcaaacccaaacttgtgaatgaggtatgagacagcaaaagaggttgaatcagaagcgttggtgcataaatggagagaaa |
14494439 |
T |
|
| Q |
114 |
atggtaatgggcaatggtggaaaagagggttagg |
147 |
Q |
| |
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|||| |||||| |||| ||||||||||| ||||| |
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| T |
14494438 |
atggaaatgggtaatgttggaaaagaggtttagg |
14494405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 14152738 - 14152646
Alignment:
| Q |
14 |
agtttggaagcagattgtgggtcaacgccaaaattgttgatgaggtaggagacagcaaaagaggttgaatctgaagtgttggtgcaaaaatgg |
106 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||| |
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| T |
14152738 |
agtttggaagcagattgtgggtcaaaaccaaaattgttgatgaggtaggagactgcaagagaggttgaatctgaagtgttggtgcagaaatgg |
14152646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 14485088 - 14484974
Alignment:
| Q |
10 |
ggaaagtttggaagcagattgtgggtcaacgccaaaattgttgatgaggtaggagacagcaaaagaggttgaatctgaagtgttggtgcaaaaatggaga |
109 |
Q |
| |
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|||||||||||||||| |||||||| || ||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| |||||| | || |
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| T |
14485088 |
ggaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtaagagacggcaaaaaaggttgaatctgaagtgttggtggaaaaatagtga |
14484989 |
T |
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| Q |
110 |
ggaaatggtaatggg |
124 |
Q |
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| T |
14484988 |
gaaaatggtaatggg |
14484974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 14481527 - 14481631
Alignment:
| Q |
12 |
aaagtttggaagcagattgtgggtcaacgccaaaattgttgatgaggtaggagacagcaaaagaggttgaatctgaagtgttggtgcaaaaatggagagg |
111 |
Q |
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|||||||||||||| |||||||| || ||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| | |||| |
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| T |
14481527 |
aaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtatgagactgcaaaagaggttgaatctgaagtattggtgcaaaaaggaagaga |
14481626 |
T |
|
| Q |
112 |
aaatg |
116 |
Q |
| |
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||||| |
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| T |
14481627 |
aaatg |
14481631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 14144756 - 14144664
Alignment:
| Q |
14 |
agtttggaagcagattgtgggtcaacgccaaaattgttgatgaggtaggagacagcaaaagaggttgaatctgaagtgttggtgcaaaaatgg |
106 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||| |||||||||||| | |||||||||||||||||||||| ||||||||| |||||| |
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| T |
14144756 |
agtttggaagcaaattgtgggtcaaacccaaaattgtgaatgaggtaggaggctgcaaaagaggttgaatctgaagggttggtgcagaaatgg |
14144664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 14165509 - 14165611
Alignment:
| Q |
14 |
agtttggaagcagattgtgggtcaacgccaaaattgttgatgaggtaggagacagcaaaagaggttgaatctgaagtgttggtgcaaaaatggagaggaa |
113 |
Q |
| |
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|||||||||||| |||||||| || |||||||||| |||||||| ||| | ||||| |||||||||| ||||||||||||||| ||||| |||| || |
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| T |
14165509 |
agtttggaagcaaattgtggggtaaacccaaaattgtgaatgaggtaagaggctgcaaatgaggttgaatttgaagtgttggtgcagaaatgtagagaaa |
14165608 |
T |
|
| Q |
114 |
atg |
116 |
Q |
| |
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||| |
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| T |
14165609 |
atg |
14165611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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