View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-16-LTR4-TNT-insertion-11 (Length: 451)
Name: Tnk88-16-LTR4-TNT-insertion-11
Description: Tnk88-16-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-16-LTR4-TNT-insertion-11 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 31 - 441
Target Start/End: Complemental strand, 43533997 - 43533591
Alignment:
| Q |
31 |
tgtgtcttatatatagttcattccatgcttacaccactatatatgtgctagtactactgttcaaacctttaatagagctagcatgagtttgatttagtgc |
130 |
Q |
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| T |
43533997 |
tgtgtcttatatatagttcattccatgcttacaccactat----gtgctagtactactgttcaaacctttaatagagctagcatgagtttgatttagtgc |
43533902 |
T |
|
| Q |
131 |
tatttatttaacttgggtaggcatcgacgaagcttcatttaacaatcatcgctacaatataatatagcacacggtcaggttcagtcttgtacaacgttta |
230 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43533901 |
tatttatttaacttgggcaggcatcgacgaagcttcatttaacaatcatcgctacaatataatatagcacacggtcaggttcagtcttgtacaacgttta |
43533802 |
T |
|
| Q |
231 |
atttcacgcggcctcattgtacaagactaccccttctttccggttaaccaaagagaaataagtatagcatagtatagttttaggtattaaaatatttgta |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43533801 |
atttcacgcggcctcattgtacaagactaccccttctttccggttaaccaaagagaaataagtatagcatagtatagttttaggtattaaaatatttgta |
43533702 |
T |
|
| Q |
331 |
cttgctttaatccatgcttttttatgcctactacacaacagggatcatcacattgaaactactataacatggttttgctgagaaagaagggtatggacta |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43533701 |
cttgctttaatccatgcttttttatgcctactacacaacagggatcatcacattgaaactactataacatggttttgctgagaaagaagggtatggacta |
43533602 |
T |
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| Q |
431 |
tgaacgtatta |
441 |
Q |
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||||||||||| |
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| T |
43533601 |
tgaacgtatta |
43533591 |
T |
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