View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Tnk88-16-LTR4-TNT-insertion-14 (Length: 438)
Name: Tnk88-16-LTR4-TNT-insertion-14
Description: Tnk88-16-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-16-LTR4-TNT-insertion-14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 8 - 428
Target Start/End: Complemental strand, 37554971 - 37554553
Alignment:
| Q |
8 |
ttcaacactgtcatgaaacttgggcaatggaggttgaaaactgttatcattcaaatccaacaacctcgatcaaatattttaatttggtaaaactgcctga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37554971 |
ttcaacactgtcatgaaacttgggcaatggaggttgaaaactgttatcattcaaatccaacaaccacgatcaaatattttaatttggtaaaactgcctga |
37554872 |
T |
|
| Q |
108 |
aattttaccagttaagttgtttcttgacactatataattgcatgtagtgaatttaacttaccaagtgaatgactcaatgtgccatattgagaccttctct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37554871 |
aattttaccagttaagttgtttcttgacactatataattgcatgtagtgaatttaacttaccaagtgaatgactcaatgtgccat--tgagaccttctct |
37554774 |
T |
|
| Q |
208 |
aggtaaattgattctcaataactgtgttattgtagatcaccccatgccatgcttctccacaaagattgttactaacccacgtagcaataagagatggtgg |
307 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37554773 |
aggcaaattgattctcaataactgtgttattgtagatcaccccatgccatgcttctccacaaagattgttactaacccacgtagcaagaagagatggtgg |
37554674 |
T |
|
| Q |
308 |
atagttcaaatgatggagaaagatcaaagaaaatgatgaatgttgatatatatgaagaggaagaaaatgaagatcataacaaacccataaaatttgagtt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37554673 |
atagttcaaatgatggagaaagatcaaagaaaatgatgaatgttgatatatatgaagaggaagaaaatgaagatcataacaaacccataaaatttgagtt |
37554574 |
T |
|
| Q |
408 |
gcgagggaaacatttatatta |
428 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
37554573 |
gcgagggaaacatttatatta |
37554553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 37556356 - 37556397
Alignment:
| Q |
387 |
caaacccataaaatttgagttgcgagggaaacatttatatta |
428 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37556356 |
caaacccataaaatttgagttgtgagggaaacatttatatta |
37556397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 385
Target Start/End: Original strand, 39215043 - 39215093
Alignment:
| Q |
335 |
agaaaatgatgaatgttgatatatatgaagaggaagaaaatgaagatcata |
385 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
39215043 |
agaaaatgatgaatgtcgatgtatatgaagaggaagacgatgaagatcata |
39215093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University