View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-16-LTR4-TNT-insertion-16 (Length: 566)
Name: Tnk88-16-LTR4-TNT-insertion-16
Description: Tnk88-16-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-16-LTR4-TNT-insertion-16 |
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Alignment Details
Target: chr4 (Bit Score: 537; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 8 - 560
Target Start/End: Complemental strand, 51999557 - 51999005
Alignment:
| Q |
8 |
tgtcggtggccagatataccaaactgatcccatgtttcttcagcactcgaccaacagaagaaaacatacattgctgcttttgttccatcatttccaaacg |
107 |
Q |
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| T |
51999557 |
tgtcggtggccagatataccaaactgatcccatgtttcttcagcacttgaccaacagaagaaaacatacattgctgcttttgttccatcatttccaaacg |
51999458 |
T |
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| Q |
108 |
atccttcaagcaatgaaactgcatctcattcattttccactcctggcatgtctaaattttatatcttatctttgaaattccatcgttccgattctgttag |
207 |
Q |
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| T |
51999457 |
atccttcaagcaatgaaactgcatctcattcattttccactcctggcatgtctaaattttatatcttatctttgaaattccatcgttccgattctgttag |
51999358 |
T |
|
| Q |
208 |
tgtagtcgcagtagcagtctgttggacatgaactttgtgcaagtggtagtcgttgttccagatctagttacaagtgagccagtggtagttgttgttcttg |
307 |
Q |
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| T |
51999357 |
tgtagtcgcagtagcagtctgttggacatgaactttgtgcaagtggtagtcgttgttccagatctagttgcaagtgagccagtggtagttgttgttcttg |
51999258 |
T |
|
| Q |
308 |
ttcctgttgcaactgggtgagtggtagtcgttgttcctaatcctattgcaactgaaccagcagtagtcatttttcctgagcctgttgtaactgcgccaac |
407 |
Q |
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| T |
51999257 |
ttcctgttgcaactgagtgagtggtagtcgttgttcctaatcctattgcaactgaaccagcagtagtcatttttcctgagcctgttgtaactgcgccaac |
51999158 |
T |
|
| Q |
408 |
ggtagttgttattcattatcctattgcgaccgagccatcaatagtcgttgttcttgatcctattgcaacttggatgaaacgaaaaaggattctagtggaa |
507 |
Q |
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| T |
51999157 |
ggtagttgttattcattgtcctattgcgaccgagccatcaatagtcgttgttcttgatcctattgcaacttggatgaaacgaaaaaggattctagtggaa |
51999058 |
T |
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| Q |
508 |
aaaagcatggaaggtaatcctggtcaacttggcagatattggtgaacaattgg |
560 |
Q |
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| T |
51999057 |
aaaagcatggaaggtaatcctggtcaacttggcagatattggtgaacaattgg |
51999005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 154 - 362
Target Start/End: Original strand, 52000197 - 52000406
Alignment:
| Q |
154 |
catgtctaaatttta-tatcttatctttgaaattccatcgttccgattctgttagtgtagtcgcagtagcagtctgttggacatgaactttgtgcaagtg |
252 |
Q |
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| T |
52000197 |
catgtctaaatttttctatcttagctatgaaattccttcattctgattctgttagtgaagcagcagcaatagcatcttggacatgaactctgtgtcaggg |
52000296 |
T |
|
| Q |
253 |
gtagtcgttgttccagatctagttacaagtgagccagtggtagttgttgttcttgttcctgttgcaactgggtgagtggtagtcgttgttcctaatccta |
352 |
Q |
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| T |
52000297 |
gtagtcattgttcctgatcctgttgcaactaagccagtgctagttgttgttcctaatcatgttgcaactgagccactagtagtggttgctcctaatccta |
52000396 |
T |
|
| Q |
353 |
ttgcaactga |
362 |
Q |
| |
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|| ||||||| |
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| T |
52000397 |
tttcaactga |
52000406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 52000040 - 52000158
Alignment:
| Q |
34 |
atcccatgtttcttcagcactcgaccaacagaagaaaacatacattgctgcttttgttccatcatttccaaacgatccttcaagcaatgaaactgcatct |
133 |
Q |
| |
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|||||| |||||| ||||| | |||||||| |||| | ||| |||| ||||| ||||||| | ||| ||||| |||||| |||||| | ||| ||| |
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| T |
52000040 |
atcccacgtttctgcagcagttgaccaacaaaagagagcatgaattgatgcttctgttccaactttttcaaacaatcctttcggcaatgtgattgcttct |
52000139 |
T |
|
| Q |
134 |
cattcattttccactcctg |
152 |
Q |
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| T |
52000140 |
cattcattttccactcctg |
52000158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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