View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-16-LTR4-TNT-insertion-19 (Length: 71)
Name: Tnk88-16-LTR4-TNT-insertion-19
Description: Tnk88-16-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-16-LTR4-TNT-insertion-19 |
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Alignment Details
Target: chr7 (Bit Score: 55; Significance: 2e-23; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 45274125 - 45274071
Alignment:
| Q |
8 |
tgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattg |
62 |
Q |
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| T |
45274125 |
tgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattg |
45274071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-21
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 45282368 - 45282314
Alignment:
| Q |
8 |
tgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattg |
62 |
Q |
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| T |
45282368 |
tgggttaccaagacagcttgtatgttcaaagcaacagacagtactaccgcaattg |
45282314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 45293708 - 45293654
Alignment:
| Q |
8 |
tgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattg |
62 |
Q |
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||||||||||||||| ||||| ||||||| ||||||||| | |||||||||||| |
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| T |
45293708 |
tgggttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaattg |
45293654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 45302668 - 45302614
Alignment:
| Q |
8 |
tgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattg |
62 |
Q |
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||||||||||||||| ||||| ||||||| ||||||||| | |||||||||||| |
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| T |
45302668 |
tgggttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaattg |
45302614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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