View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-16-LTR4-TNT-insertion-2 (Length: 362)
Name: Tnk88-16-LTR4-TNT-insertion-2
Description: Tnk88-16-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-16-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 9e-95; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 39921813 - 39921622
Alignment:
| Q |
8 |
ccaacgccggaaattttaagtggtgaataatcagaaccatctagagcaacactccaaccataactgttcttgaaatctggttttctgtcatagaggttgc |
107 |
Q |
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| T |
39921813 |
ccaacgccggaacttttaagtggtgaataatcagaaccatctagagcaacactccaaccataactgttcttgaaatctggttttctgtcatagaggttgc |
39921714 |
T |
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| Q |
108 |
aagagcgaggggatttgtgtgcaaccttgtcctttttcatattttctatttcatttccaaatacagattccaatagcttcctccaagaccaa |
199 |
Q |
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| T |
39921713 |
aagagcgaggggatttatgtgcaaccttgtcctttttcatattttctatttcacctccaaatacagattccaatagcttcctccaagaccaa |
39921622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 39910494 - 39910303
Alignment:
| Q |
8 |
ccaacgccggaaattttaagtggtgaataatcagaaccatctagagcaacactccaaccataactgttcttgaaatctggttttctgtcatagaggttgc |
107 |
Q |
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| T |
39910494 |
ccaacaccggaacttttaagtggtgaataatcagaaccgtctagagcaacactccaaccataactgttcttgaaatctggttttctgtcatagaggttgc |
39910395 |
T |
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| Q |
108 |
aagagcgaggggatttgtgtgcaaccttgtcctttttcatattttctatttcatttccaaatacagattccaatagcttcctccaagaccaa |
199 |
Q |
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| T |
39910394 |
aagagcgaggggatttatgtgcaaccttgtcctttttaatattttctatttcatttccaaatacagattccaatagcttcctccaagaccaa |
39910303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 39814036 - 39813845
Alignment:
| Q |
8 |
ccaacgccggaaattttaagtggtgaataatcagaaccatctagagcaacactccaaccataactgttcttgaaatctggttttctgtcatagaggttgc |
107 |
Q |
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| T |
39814036 |
ccaacgccggaacttttaagtggtgaataatcagaaccgtctagagaaacactccaaccataactgttcttgaaatctggttttctgtcatagaggttgc |
39813937 |
T |
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| Q |
108 |
aagagcgaggggatttgtgtgcaaccttgtcctttttcatattttctatttcatttccaaatacagattccaatagcttcctccaagaccaa |
199 |
Q |
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| T |
39813936 |
aagagcgaggggatttatgtgcaaccttgtcctttttcatattttctatttcatctccaaatacagattccaaaagcttcctccaaggccaa |
39813845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 39927101 - 39926910
Alignment:
| Q |
8 |
ccaacgccggaaattttaagtggtgaataatcagaaccatctagagcaacactccaaccataactgttcttgaaatctggttttctgtcatagaggttgc |
107 |
Q |
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|||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39927101 |
ccaacgccggaacttttaagtggtgaataatcagaaccgtccagagcaacactccaaccataactgtttttgaaatctggttttctgtcatagaggttgc |
39927002 |
T |
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| Q |
108 |
aagagcgaggggatttgtgtgcaaccttgtcctttttcatattttctatttcatttccaaatacagattccaatagcttcctccaagaccaa |
199 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39927001 |
aagagcgaggggatttatgtgcaacattgtcctttttcatattttctatttcatctccaaatacagattccaatagcttcctccaagaccaa |
39926910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 39902145 - 39901954
Alignment:
| Q |
8 |
ccaacgccggaaattttaagtggtgaataatcagaaccatctagagcaacactccaaccataactgttcttgaaatctggttttctgtcatagaggttgc |
107 |
Q |
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|||| ||| ||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39902145 |
ccaatgccagaacttttaagtggtgaataatcagaaccgtctagagaaacactccaaccataactgttcttgaaatctggttttctgtcatagaggttgc |
39902046 |
T |
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| Q |
108 |
aagagcgaggggatttgtgtgcaaccttgtcctttttcatattttctatttcatttccaaatacagattccaatagcttcctccaagaccaa |
199 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| |||||||| |||| ||||||||||||| |
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| T |
39902045 |
aagagcgaggggatttatgtgcaaccttgtcctttttcatattttttatttcatctccaaatactgattccaaaagctccctccaagaccaa |
39901954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 39825535 - 39825357
Alignment:
| Q |
21 |
ttttaagtggtgaataatcagaaccatctagagcaacactccaaccataactgttcttgaaatctggttttctgtcatagaggttgcaagagcgagggga |
120 |
Q |
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|||| ||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
39825535 |
ttttgagtggagaataatcagaaccgtctagagcaacactccaaccataactatttttgaaatctggttttctatcatagaggttgcaagagtgagggga |
39825436 |
T |
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| Q |
121 |
tttgtgtgcaaccttgtcctttttcatattttctatttcatttccaaatacagattccaatagcttcctccaagaccaa |
199 |
Q |
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|||||| | ||| ||||| | |||| |||||| ||| ||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
39825435 |
tttgtgggtaactttgtcgtatttcttattttttatctcattgccaaatacagattccaataagttcctccaagaccaa |
39825357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 39805517 - 39805327
Alignment:
| Q |
8 |
ccaacgccggaaattttaagtggtgaataatcagaaccatctagagcaacactccaaccataactgttcttgaaatctggttttctgtcatagaggttgc |
107 |
Q |
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|||| ||||||| |||| ||||| ||||| |||||||| |||||||||||||||||||||||||| || | ||||||||||||||| ||||||||||||| |
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| T |
39805517 |
ccaatgccggaacttttgagtggagaatagtcagaaccgtctagagcaacactccaaccataactattttggaaatctggttttctatcatagaggttgc |
39805418 |
T |
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| Q |
108 |
aagagcgaggggatttgtgtgcaaccttgtcctttttcatattttctatttcatttccaaatacagattccaatagcttcctccaagacca |
198 |
Q |
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||||| ||||||||||||| | ||| ||||| ||| |||||| ||| ||||| ||||||||||| ||||||| ||||||||||||||| |
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| T |
39805417 |
aagagtgaggggatttgtgggtaactttgtcgcatttattattttttatctcattgccaaatacagactccaataacttcctccaagacca |
39805327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 39921556 - 39921467
Alignment:
| Q |
265 |
gtggtgtagtttctcttcctcttttaattgaaggaatttagtccatatgcttgaagcacttgcatgtgaacggcccacgtgtacaattgg |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39921556 |
gtggtgtagtttctcttcctcttttaattgaaggaatttagtccatatgcttgaagcacttgcatgtgaacggcccacatgtacaattgg |
39921467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 274 - 354
Target Start/End: Complemental strand, 39910228 - 39910148
Alignment:
| Q |
274 |
tttctcttcctcttttaattgaaggaatttagtccatatgcttgaagcacttgcatgtgaacggcccacgtgtacaattgg |
354 |
Q |
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| T |
39910228 |
tttctcatcctcttttagttgaaggaatttagtccatatgcttgaagcacttgcatgtgaatggcccacgtgtacaattgg |
39910148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 39805251 - 39805162
Alignment:
| Q |
265 |
gtggtgtagtttctcttcctcttttaattgaaggaatttagtccatatgcttgaagcacttgcatgtgaacggcccacgtgtacaattgg |
354 |
Q |
| |
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||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
39805251 |
gtggtttagtttctcatcctcttttagttgaaggaattttgtccatatgcttgaagaacttgcatgtgaacggcccacatgtacaattgg |
39805162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 39813779 - 39813690
Alignment:
| Q |
265 |
gtggtgtagtttctcttcctcttttaattgaaggaatttagtccatatgcttgaagcacttgcatgtgaacggcccacgtgtacaattgg |
354 |
Q |
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||||| |||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
39813779 |
gtggtttagtttgtcatcctcttttagttgaaggaatttagtccatatgcttgaagcacttgcatgtgaatggcccacatgtacaattgg |
39813690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 274 - 354
Target Start/End: Complemental strand, 39882865 - 39882785
Alignment:
| Q |
274 |
tttctcttcctcttttaattgaaggaatttagtccatatgcttgaagcacttgcatgtgaacggcccacgtgtacaattgg |
354 |
Q |
| |
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|||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39882865 |
tttctcatcctctttcagttgaaggaatttagtccatatgcttgaagcacttgcatgtgaagggcccacgtgtacaattgg |
39882785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 274 - 354
Target Start/End: Complemental strand, 39926835 - 39926755
Alignment:
| Q |
274 |
tttctcttcctcttttaattgaaggaatttagtccatatgcttgaagcacttgcatgtgaacggcccacgtgtacaattgg |
354 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
39926835 |
tttctcatcctcttttagttgaaggaatttagtccatatgcttgaagcacttgcatgtgaatggcccatgtgtacaattgg |
39926755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 39825288 - 39825199
Alignment:
| Q |
265 |
gtggtgtagtttctcttcctcttttaattgaaggaatttagtccatatgcttgaagcacttgcatgtgaacggcccacgtgtacaattgg |
354 |
Q |
| |
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||||| |||||| || |||||||||| |||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
39825288 |
gtggtttagtttgtcatcctcttttagttgaaggaattttgtccatatgtttgaagcacttggatgtgaacggcccacgtgtacaattgg |
39825199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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