View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-16-LTR4-TNT-insertion-4 (Length: 488)
Name: Tnk88-16-LTR4-TNT-insertion-4
Description: Tnk88-16-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-16-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 290
Target Start/End: Original strand, 12851160 - 12851438
Alignment:
| Q |
12 |
taattggctaagttgagaaaaatttaccatgaggaaagaacatggaagaatggaggctcacttatggcataatccaagctatgtgtgacgcagtatccac |
111 |
Q |
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| T |
12851160 |
taattggctaagttgagaaaaacttaccatgaggaaagaacatggaagaatggaggctcacttatggcataatccaagctatgtgtgaggcagtatccac |
12851259 |
T |
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| Q |
112 |
tcttccgaagtggtagttaaaggaaggcttagatggcacattggtgacggtaaagacatcaacgtttggaaggatccatggctctgtaacagtagtagtg |
211 |
Q |
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| T |
12851260 |
tcttccgaagtggtagttaaaggaaggcttagatggcacattggtgacggtaaagacatcaacgtttggaaggatccatggctctgtaacagtagtagtg |
12851359 |
T |
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| Q |
212 |
cgtgtgtagtttccaatcccatcatatgtcacaaagatttaagagcttctcatcttatggtcacactagtggccaatgg |
290 |
Q |
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| T |
12851360 |
cgtgtgtagtttccaatcccatcatatgtcacaaagatttaagagcttctcatcttatggtcacactagtggccaatgg |
12851438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 286 - 480
Target Start/End: Original strand, 12857193 - 12857387
Alignment:
| Q |
286 |
aatggcacctaggcgtgctatcaacgatgtctcagaaacgcgacatagacggaaccgaaaattcctctagggcatatgagagatcaacctacttggatgc |
385 |
Q |
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| T |
12857193 |
aatggcacctaggcgtgctgtcaacgatgtctcagaaacgcgacatagacggaaccgaaaattcctctagggcatatgagagatcaacctacttggatgc |
12857292 |
T |
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| Q |
386 |
atagccgcgatggtgtgtatacagtaaaattggcttactattacattatggaacaacttatggataacaccaaatttcaggttcccagcaattgg |
480 |
Q |
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| T |
12857293 |
atagccgtgatggttcatatacagtaaaattggcttaatattacattatggaacaacttataaataacaccaaatttcaggttcccaacaattgg |
12857387 |
T |
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