View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-17-LTR4-TNT-insertion-1 (Length: 486)
Name: Tnk88-17-LTR4-TNT-insertion-1
Description: Tnk88-17-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-17-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 478
Target Start/End: Original strand, 30405263 - 30405731
Alignment:
| Q |
9 |
gaagcactttgaccctcaagttaatggaagattaaggtgagttaatagtagtaaaaattgatgagtaccatgttttgataagaaaggtctattatatagt |
108 |
Q |
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| T |
30405263 |
gaagcactttgacgctcaagttaatggaagattaaggtgagttaatagtagtaaaaattgatgagtaccatgtttttataagaaaggcctattatatagt |
30405362 |
T |
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| Q |
109 |
ggagtgattcag---aaatggaggaaaaatctattgagagcgttgagtatacaagtgaatctctccttaacaagcaagtcaatcaagatcatgtagtgat |
205 |
Q |
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| T |
30405363 |
ggagtgattcaggagaaatggaggaaaagtgtattgagagcgttgag----caagtgaatctctccttaacaagcaagtcaatcaagatcatgtagtgat |
30405458 |
T |
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| Q |
206 |
aatccttgaagagatgtcacacatgtggatttggactcgtaatgaggaaatcctgtccagatgtgctttggccggtccaaactatcaatcnnnnnnnnnn |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||| |
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| T |
30405459 |
aatccttgaagagatgtcacacatgtggatttggactcgtaatgaggaaatcctattcagatgtgctttggtcggtccaaactatcaatagatatttttt |
30405558 |
T |
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| Q |
306 |
nnnnaaaaaatcaaactaacccccctaatttaacatcagggagaatcgaattgagatcttgagaggagcacaattgaagatctcaagttaacatcatgtg |
405 |
Q |
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| T |
30405559 |
ttttaagaaatcaaactaactcacctaaattaacattagggtgaatcaaattgagatcttgagaggagcacaattaaagatctcaagtcaatatcatgtg |
30405658 |
T |
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| Q |
406 |
gctaattcaagtgagttactcgataaggataattttaaccatgagttaaacttgggtactctggattcaatta |
478 |
Q |
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| T |
30405659 |
gctaattcaagtgggttactcgataaggatagttttaaccatgagttaaacttgggtactctggattcaatta |
30405731 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 18847432 - 18847468
Alignment:
| Q |
356 |
ttgagatcttgagaggagcacaattgaagatctcaag |
392 |
Q |
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| T |
18847432 |
ttgagatcttgagaggagcacactcgaagatctcaag |
18847468 |
T |
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