View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk88-17-LTR4-TNT-insertion-2 (Length: 404)

Name: Tnk88-17-LTR4-TNT-insertion-2
Description: Tnk88-17-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk88-17-LTR4-TNT-insertion-2
Tnk88-17-LTR4-TNT-insertion-2
[»] chr4 (3 HSPs)
chr4 (9-143)||(16438087-16438221)
chr4 (294-381)||(16443930-16444017)
chr4 (258-294)||(16443853-16443889)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 16438087 - 16438221
Alignment:
Q  9 tttccgctgttctttgagcatcatccgaccctgctaaactggtattagaatcaataaaaggtttttgtccttctcatgcacgcaaccttttggtggatga 108  Q
    |||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||    
T  16438087 tttcggctgttcttcgagcatcatccgaccctgctaaactggtgttagaatcaataaaaggttgttgtccttctcatgtacgtaaccttttggtggatga 16438186  T
Q  109 actatataaaacttcatctgtcattagttttcatg 143  Q
    |||||||||||||||| ||||||||||| ||||||    
T  16438187 actatataaaacttcacctgtcattagtcttcatg 16438221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 294 - 381
Target Start/End: Original strand, 16443930 - 16444017
Alignment:
Q  294 tatctaggaaagtcattctttgaatttaaagataggagattgatattatggccagcccagccacgataacgccgacatatgtaaagat 381  Q
    |||||||||||||||||||||| ||||||||| || || ||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  16443930 tatctaggaaagtcattctttgcatttaaagacagaagcttgatattatggccaccccagccacgacaacgccgacatatgtaaagat 16444017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 16443853 - 16443889
Alignment:
Q  258 ggatgccttagtagtattaactaattatattgataat 294  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  16443853 ggatgccttagtagtatgaaccaattatattgataat 16443889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University