View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-17-LTR4-TNT-insertion-3 (Length: 579)
Name: Tnk88-17-LTR4-TNT-insertion-3
Description: Tnk88-17-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-17-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 480; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 8 - 570
Target Start/End: Complemental strand, 2057779 - 2057218
Alignment:
| Q |
8 |
atttatcctaatagttatttgttttattttgttgaatgaataagtggggaatcccatattcaaaccctggccctgcatattttaatgtcctcaccaactg |
107 |
Q |
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| T |
2057779 |
atttatcctaatagttatttgttttattttgttgaatgaataagtggggaatcccatattcaaaccccggccttgcatattgtaatgtcctcaccaactg |
2057680 |
T |
|
| Q |
108 |
aggtatgcctctcatggggactcaacagaattgatatatgcatttctagtaaacatgaaagctatatttcattaataaatacatcttaaaataagaatat |
207 |
Q |
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| T |
2057679 |
aggtatgcctctcatggggattcaacagaattgatatatgcatttctagtacacatgaaagctatatttcattaataaatacatcttaaaataagaatat |
2057580 |
T |
|
| Q |
208 |
caaagtaataacaccaattaaatatgcaatgatatatgtggtctcactgcaattcacccnnnnnnnnngtccaagtttgagtaccttaacttacgactta |
307 |
Q |
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| T |
2057579 |
caaagtaataactccaattaaatatgcaatgatatatgtggtctcactgcaattcacccaaaaaaaaagtccaagtttgagtaccttaacttacgtctta |
2057480 |
T |
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| Q |
308 |
atgaaagactaacatatacacgagcaccgaaggcattgataatgacaagtggacaccattaatgatttgaaaatatagcaaaaatgacgtgtgttagaaa |
407 |
Q |
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| T |
2057479 |
-tgaaagactaacatatacacgagcaccgaaggcattgataatgacaagtggacaccattaatgatttgaaaatatagcaaaaatgatgtgtgttagaaa |
2057381 |
T |
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| Q |
408 |
ctggacacaccttttaactgaagcgtcagtgccacaaacgataataaccacagttcaaggagtgcataaattttatacgcatgaatacaaacatactgcg |
507 |
Q |
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| T |
2057380 |
ctggacacacctttaaactgaagtgtcagtgccacaaacgataataaccacagttcaaggagtgcataaattttatacacatgaatacaaacatactgcg |
2057281 |
T |
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| Q |
508 |
ggaaaatcttctggttttggagtatcaggagccaagtaacaactaaaaccatccctccaattg |
570 |
Q |
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| T |
2057280 |
ggaaaatcttctggttttggagtatcaggagccaagtaacaactaaaactatccctccaattg |
2057218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 280 - 385
Target Start/End: Complemental strand, 2050528 - 2050424
Alignment:
| Q |
280 |
aagtttgagtaccttaacttacgacttaatgaaagactaacatatacacgagcaccgaaggcattgataatgacaagtggacaccattaatgatttgaaa |
379 |
Q |
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|||||||| |||||||||||| | |||| ||||| ||||||||||||||||| | |||||| ||||||||||| ||||| || |||||||| |||||||| |
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| T |
2050528 |
aagtttgaataccttaacttaggtctta-tgaaacactaacatatacacgagtagcgaaggaattgataatgataagtgaacgccattaataatttgaaa |
2050430 |
T |
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| Q |
380 |
atatag |
385 |
Q |
| |
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|||||| |
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| T |
2050429 |
atatag |
2050424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 502 - 570
Target Start/End: Complemental strand, 2050323 - 2050255
Alignment:
| Q |
502 |
actgcgggaaaatcttctggttttggagtatcaggagccaagtaacaactaaaaccatccctccaattg |
570 |
Q |
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| T |
2050323 |
actgcgggaaaatcttctggtttgggagtatcaggagccaagtaacacgcaaaactatccctccaattg |
2050255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 508 - 570
Target Start/End: Complemental strand, 2028540 - 2028478
Alignment:
| Q |
508 |
ggaaaatcttctggttttggagtatcaggagccaagtaacaactaaaaccatccctccaattg |
570 |
Q |
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| T |
2028540 |
ggaaaatcttctggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattg |
2028478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 499 - 569
Target Start/End: Complemental strand, 10767724 - 10767654
Alignment:
| Q |
499 |
catactgcgggaaaatcttctggttttggagtatcaggagccaagtaacaactaaaaccatccctccaatt |
569 |
Q |
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| T |
10767724 |
catactacaggaatatcttctggtttgggagtatcaggagccaagtaacatgtaaaagtatccctccaatt |
10767654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 570
Target Start/End: Original strand, 1950453 - 1950515
Alignment:
| Q |
508 |
ggaaaatcttctggttttggagtatcaggagccaagtaacaactaaaaccatccctccaattg |
570 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||| | || ||||||||||||| |
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| T |
1950453 |
ggaaaatcttgtggtttgggagtatcaggagccaagtaacaagcacaagtatccctccaattg |
1950515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 508 - 570
Target Start/End: Original strand, 48908714 - 48908776
Alignment:
| Q |
508 |
ggaaaatcttctggttttggagtatcaggagccaagtaacaactaaaaccatccctccaattg |
570 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||| |
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| T |
48908714 |
ggaaaatcttctggtttgggagtatcaggagccaagaaacaaataaaagtatccctccaattg |
48908776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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