View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Tnk88-17-LTR4-TNT-insertion-4 (Length: 776)
Name: Tnk88-17-LTR4-TNT-insertion-4
Description: Tnk88-17-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-17-LTR4-TNT-insertion-4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 9 - 531
Target Start/End: Original strand, 44141130 - 44141652
Alignment:
| Q |
9 |
acagaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44141130 |
acagaggagattttgaaagagaatcctagtgtttgtgaatacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagactag |
44141229 |
T |
|
| Q |
109 |
ggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctgg |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
44141230 |
ggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagattactcacttgatcgtttgcaccacaagtggtgtagacatgcctgg |
44141329 |
T |
|
| Q |
209 |
agctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
44141330 |
agctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcacggtccttcgt |
44141429 |
T |
|
| Q |
309 |
ttggctaaagatttggcggagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcact |
408 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44141430 |
ttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtctgttctgaagtcactgcagtcacatttcgcggccctagtgatactcact |
44141529 |
T |
|
| Q |
409 |
tggacagccttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagat |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44141530 |
tggacagccttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagat |
44141629 |
T |
|
| Q |
509 |
ggtttggactgcacaaacaattg |
531 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
44141630 |
ggtttggactgcacaaacaattg |
44141652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 9 - 531
Target Start/End: Original strand, 44128503 - 44129025
Alignment:
| Q |
9 |
acagaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44128503 |
acagaggagattttgaaagagaatcctagtgtttgtgaatacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagactag |
44128602 |
T |
|
| Q |
109 |
ggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctgg |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
44128603 |
ggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagattactcacttgatcgtttgcaccacaagtggtgtagacatgcctgg |
44128702 |
T |
|
| Q |
209 |
agctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
44128703 |
agctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcacggtccttcgt |
44128802 |
T |
|
| Q |
309 |
ttggctaaagatttggcggagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcact |
408 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44128803 |
ttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtctgttctgaagtcactgcagtcacatttcgcggccctagtgatactcact |
44128902 |
T |
|
| Q |
409 |
tggacagccttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagat |
508 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44128903 |
tggacagccttgttggacaggccctatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagat |
44129002 |
T |
|
| Q |
509 |
ggtttggactgcacaaacaattg |
531 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
44129003 |
ggtttggactgcacaaacaattg |
44129025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 9 - 531
Target Start/End: Original strand, 44132708 - 44133230
Alignment:
| Q |
9 |
acagaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44132708 |
acagaggagattttgaaagagaatcctagtgtttgtgaatacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagactag |
44132807 |
T |
|
| Q |
109 |
ggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctgg |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
44132808 |
ggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagattactcacttgatcgtttgcaccacaagtggtgtagacatgcctgg |
44132907 |
T |
|
| Q |
209 |
agctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
44132908 |
agctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcacggtccttcgt |
44133007 |
T |
|
| Q |
309 |
ttggctaaagatttggcggagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcact |
408 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44133008 |
ttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtctgttctgaagtcactgcagtcacatttcgcggccctagtgatactcact |
44133107 |
T |
|
| Q |
409 |
tggacagccttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagat |
508 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44133108 |
tggacagccttgttggacaggccctatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagat |
44133207 |
T |
|
| Q |
509 |
ggtttggactgcacaaacaattg |
531 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
44133208 |
ggtttggactgcacaaacaattg |
44133230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 9 - 531
Target Start/End: Original strand, 5310326 - 5310848
Alignment:
| Q |
9 |
acagaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattag |
108 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5310326 |
acagaggagattttgaaagaaaatcctagtgtttgtgaatacatggcaccttcattggatgcaaggcaagacatggtggtggtagaggtacctagactag |
5310425 |
T |
|
| Q |
109 |
ggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctgg |
208 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
5310426 |
gaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtagacatgcctgg |
5310525 |
T |
|
| Q |
209 |
agctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgt |
308 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||| |
|
|
| T |
5310526 |
agctgattatcaactcacaaaactcttgggccttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgt |
5310625 |
T |
|
| Q |
309 |
ttggctaaagatttggcggagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcact |
408 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||| ||||||||||||| |
|
|
| T |
5310626 |
ttggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcaccgctgtcacatttcgtggccccagtgatactcact |
5310725 |
T |
|
| Q |
409 |
tggacagccttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagat |
508 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||||||||||||||| || ||||||||||| || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5310726 |
tggacagccttgttgggcaagcattgtttggagatggagctgctgctcttattgttggttctgacccagtaccagaaattgagaaacctatatttgagat |
5310825 |
T |
|
| Q |
509 |
ggtttggactgcacaaacaattg |
531 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5310826 |
ggtttggactgcacaaacaattg |
5310848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 13 - 531
Target Start/End: Complemental strand, 46707177 - 46706659
Alignment:
| Q |
13 |
aggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattagggaa |
112 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46707177 |
aggagattttgaaagagaatcccagtgtttgtgaatatatggcaccttcattggatgccaggcaagacatggtggtggtagaggtacctagactagggaa |
46707078 |
T |
|
| Q |
113 |
ggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctggagct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
46707077 |
ggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattacccacttaatcgtttgcactactagtggtgtagacatgcctggagct |
46706978 |
T |
|
| Q |
213 |
gattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgtttgg |
312 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
46706977 |
gattaccaactcacaaaactcttcggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcacggggcttcgtttgg |
46706878 |
T |
|
| Q |
313 |
ctaaagatttggcggagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcacttgga |
412 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
46706877 |
ctaacgatttggctgagaacaacaaaggtgcccgtgtattggttgtttgttctgaagtcactgcagtcacattccgcggccctagtgatactcacttgga |
46706778 |
T |
|
| Q |
413 |
cagccttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagatggtt |
512 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46706777 |
cagccttgttgggcaagcactgtttggagtcagagctgctgcacttattgttggttctgatccagtaccagaaattgagaaacctatatttgagatggtt |
46706678 |
T |
|
| Q |
513 |
tggactgcacaaacaattg |
531 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
46706677 |
tggacttcacaaacaattg |
46706659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 9 - 531
Target Start/End: Complemental strand, 5289890 - 5289368
Alignment:
| Q |
9 |
acagaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattag |
108 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5289890 |
acagaagaaattttgaaagaaaatccaagtgtttgtgaatacatggccccttcattggatgctaggcaagacatggtggtggtagaggtacctagactag |
5289791 |
T |
|
| Q |
109 |
ggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctgg |
208 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
5289790 |
gaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtagacatgcctgg |
5289691 |
T |
|
| Q |
209 |
agctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgt |
308 |
Q |
| |
|
||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||| |
|
|
| T |
5289690 |
agccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgt |
5289591 |
T |
|
| Q |
309 |
ttggctaaagatttggcggagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcact |
408 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| || ||||| ||||||||||||| |
|
|
| T |
5289590 |
ttggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcaccgctgtcacattccgtggccccagtgatactcact |
5289491 |
T |
|
| Q |
409 |
tggacagccttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagat |
508 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||| || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5289490 |
tggacagccttgttgggcaagcactgtttggagatggagctgctgctcttattgttggttctgacccagtaccagaaattgagaaacctatatttgagat |
5289391 |
T |
|
| Q |
509 |
ggtttggactgcacaaacaattg |
531 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5289390 |
ggtttggactgcacaaacaattg |
5289368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 9 - 531
Target Start/End: Original strand, 5315040 - 5315562
Alignment:
| Q |
9 |
acagaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattag |
108 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5315040 |
acagaagaaattttgaaagaaaatcctagtgtttgtgaatacatggccccttcattggatgctaggcaagacatggtggtggtagaggtacctagactag |
5315139 |
T |
|
| Q |
109 |
ggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctgg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5315140 |
ggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgttgacatgcctgg |
5315239 |
T |
|
| Q |
209 |
agctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgt |
308 |
Q |
| |
|
||| ||||| |||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||||||||| |||||||| || ||||||||||| ||| |
|
|
| T |
5315240 |
agcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaagggtgctttgcaggtggcacggtgctccgt |
5315339 |
T |
|
| Q |
309 |
ttggctaaagatttggcggagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcact |
408 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| || |||||||||||||||| |
|
|
| T |
5315340 |
ttggctaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcaccgctgtcacatttcgtggtcctagtgatactcact |
5315439 |
T |
|
| Q |
409 |
tggacagccttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagat |
508 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| || || |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
5315440 |
tagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccagtaccagaaatagagaaacctatatttgagat |
5315539 |
T |
|
| Q |
509 |
ggtttggactgcacaaacaattg |
531 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5315540 |
ggtttggactgcacaaacaattg |
5315562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 9 - 531
Target Start/End: Original strand, 5302425 - 5302947
Alignment:
| Q |
9 |
acagaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattag |
108 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5302425 |
acagaagaaattttgaaagaaaatcctagtgtttgtgaatacatggccccttcattggatgctaggcaagacatggtggtggtagaggtacctagactag |
5302524 |
T |
|
| Q |
109 |
ggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctgg |
208 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | |
|
|
| T |
5302525 |
gaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtagacatgcccga |
5302624 |
T |
|
| Q |
209 |
agctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgt |
308 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||||| || ||||||||||||||| |
|
|
| T |
5302625 |
agctgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgt |
5302724 |
T |
|
| Q |
309 |
ttggctaaagatttggcggagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcact |
408 |
Q |
| |
|
||||| |||||| | || |||||||||||||||||||||||||||||||| ||||| || ||||| || || |||||||| ||||||||||||||||||| |
|
|
| T |
5302725 |
ttggccaaagatctagctgagaacaacaaaggtgctcgtgtgttggttgtatgttcagaggtcaccgctgtcacatttcgtggccctagtgatactcact |
5302824 |
T |
|
| Q |
409 |
tggacagccttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagat |
508 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| || || || |||||||||||||||||||| ||||||||||| |
|
|
| T |
5302825 |
tggacagtcttgttggacaagcactatttggagatggagctgctgctcttattgttggctctgaccccgtaccagaaattgagaaacctatatttgagat |
5302924 |
T |
|
| Q |
509 |
ggtttggactgcacaaacaattg |
531 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5302925 |
ggtttggactgcacaaacaattg |
5302947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 9 - 531
Target Start/End: Original strand, 5284237 - 5284759
Alignment:
| Q |
9 |
acagaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattag |
108 |
Q |
| |
|
||||| || ||||||||| | ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5284237 |
acagaagaaattttgaaaaaaaatcctagtgtttgtgaatacatggccccttcattggatgcaaggcaagacatggtggtggtagaggtacctagactag |
5284336 |
T |
|
| Q |
109 |
ggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctgg |
208 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
5284337 |
gaaaggaggctgcagtgaaggctataaaagaatggggccaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtagacatgcctgg |
5284436 |
T |
|
| Q |
209 |
agctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgt |
308 |
Q |
| |
|
||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||||| || || ||||| |||||| |
|
|
| T |
5284437 |
agccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaacaagggtgttttgcaggtggtacggtacttcgt |
5284536 |
T |
|
| Q |
309 |
ttggctaaagatttggcggagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcact |
408 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| |||||||| |||||||||| |
|
|
| T |
5284537 |
ttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcaccgctgtcacatttcgtggccctagcgatactcact |
5284636 |
T |
|
| Q |
409 |
tggacagccttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagat |
508 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||| || |||||||| || || ||| ||||||||||||||| ||| ||||||||||| |
|
|
| T |
5284637 |
tagacagtcttgttggacaagcactatttggagatggagctgctgctcttattgttggctctgacccaataccagaaattgagagacctatatttgagat |
5284736 |
T |
|
| Q |
509 |
ggtttggactgcacaaacaattg |
531 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5284737 |
ggtttggactgcacaaacaattg |
5284759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 9 - 529
Target Start/End: Original strand, 1504906 - 1505426
Alignment:
| Q |
9 |
acagaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattag |
108 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1504906 |
acagaggagattttaaaagagaatcccagtgtttgtgaatacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagactag |
1505005 |
T |
|
| Q |
109 |
ggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctgg |
208 |
Q |
| |
|
| ||||||||||| || || |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
1505006 |
gaaaggaggctgccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaattgtttgcaccacaagtggtgtagacatgcctgg |
1505105 |
T |
|
| Q |
209 |
agctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgt |
308 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||| || ||||| || || |||||||||||| |
|
|
| T |
1505106 |
agctgattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttcgt |
1505205 |
T |
|
| Q |
309 |
ttggctaaagatttggcggagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcact |
408 |
Q |
| |
|
||||| || || ||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1505206 |
ttggccaaggacttggctgagaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacatttcgcggccctagtgatactcact |
1505305 |
T |
|
| Q |
409 |
tggacagccttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagat |
508 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || |
|
|
| T |
1505306 |
tggacagccttgttggacaagctctatttggagatggagctgctgcactaattgttggttcagatccaataccagaaattgagaaacctatatttgaaat |
1505405 |
T |
|
| Q |
509 |
ggtttggactgcacaaacaat |
529 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1505406 |
ggtttggactgcacaaacaat |
1505426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 9 - 531
Target Start/End: Original strand, 1492097 - 1492619
Alignment:
| Q |
9 |
acagaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattag |
108 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| |
|
|
| T |
1492097 |
acagaggagattttaaaagagaatcctaatgtttgtgaatacatggcaccttcattggatgctagacaagacatggtggtggtagaagtacctagactag |
1492196 |
T |
|
| Q |
109 |
ggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctgg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
1492197 |
ggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagcggtgtagacatgcctgg |
1492296 |
T |
|
| Q |
209 |
agctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgt |
308 |
Q |
| |
|
|| ||||| |||||||| |||||||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||||| || |||||||| |||||| |
|
|
| T |
1492297 |
ggccgattatcaactcactaaactcttaggtcttcgtccatatgtaaaaagatacatgatgtaccagcaaggttgttttgcaggtggcacggtacttcgt |
1492396 |
T |
|
| Q |
309 |
ttggctaaagatttggcggagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcact |
408 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || || |||||||| |||| |
|
|
| T |
1492397 |
ttggctaaggatttggctgagaacaacaaaggtgctcgtgtgttagttgtttgttctgaagtcactgcagtcacatttcgtggtcccagtgatacacact |
1492496 |
T |
|
| Q |
409 |
tggacagccttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagat |
508 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| |||||||||||||| ||||| ||||||||||| |
|
|
| T |
1492497 |
tggacagtcttgttggacaagcactatttggagatggagcagctgcacttattgttgggtctgatccggtaccagaaattgaaaaacctatatttgagat |
1492596 |
T |
|
| Q |
509 |
ggtttggactgcacaaacaattg |
531 |
Q |
| |
|
| ||||||| ||||||||||||| |
|
|
| T |
1492597 |
gatttggacagcacaaacaattg |
1492619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 15 - 531
Target Start/End: Original strand, 1482128 - 1482644
Alignment:
| Q |
15 |
gagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattagggaagg |
114 |
Q |
| |
|
|||||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
1482128 |
gagattttgaaagaaaatcctagtgtatgcgaatacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtgcctagactaggaaagg |
1482227 |
T |
|
| Q |
115 |
aggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctggagctga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |||| ||||| |||||||| ||||||||||| || || |
|
|
| T |
1482228 |
aggctgcagtgaaggctataaaagaatggggccaaccaaaatcaaagattacacacttaatattttgtaccacaagtggtgtagacatgcctggtgccga |
1482327 |
T |
|
| Q |
215 |
ttaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgtttggct |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||||||| || || ||||||||||||||||| |
|
|
| T |
1482328 |
ttaccaactcacaaaactcttaggtcttcgtccatatgtgaagagatacatgatgtaccaacaaggatgctttgcaggtgggacggtgcttcgtttggcc |
1482427 |
T |
|
| Q |
315 |
aaagatttggcggagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcacttggaca |
414 |
Q |
| |
|
|| || ||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||| || || |||||||||||||| ||||||| |
|
|
| T |
1482428 |
aaggacttggctgagaataataaaggtgctcgtgtgttggttgtttgttctgaagttactgcagtgacattccgtggtcctagtgatactcatttggaca |
1482527 |
T |
|
| Q |
415 |
gccttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagatggtttg |
514 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1482528 |
gtcttgttggacaagcactctttggagatggagctgctgcactcattgttggttctgacccaataccagaaattgagaaacctatatttgagatggtttg |
1482627 |
T |
|
| Q |
515 |
gactgcacaaacaattg |
531 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1482628 |
gactgcacaaacaattg |
1482644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 531
Target Start/End: Original strand, 1477937 - 1478450
Alignment:
| Q |
18 |
attttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattagggaaggagg |
117 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
1477937 |
attttgaaagaaaatccaagtgtatgtgaatacatggcaccgtcattggatgctaggcaggacatggtggtggtagaagtacctagactaggaaaggagg |
1478036 |
T |
|
| Q |
118 |
ctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctggagctgatta |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| ||| |||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
1478037 |
ctgcagtgaaagctataaaagaatggggccaaccaaaatcaaagattacacacttgatcttttgcaccacaagtggtgtagacatgcctggcgctgatta |
1478136 |
T |
|
| Q |
218 |
ccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgtttggctaaa |
317 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| || || ||||||||||||||||| || |
|
|
| T |
1478137 |
ccaactcaccaaactcttaggtcttcgtccatatgtgaagaggtatatgatgtaccaacaaggatgttttgcaggtgggacggtgcttcgtttggccaag |
1478236 |
T |
|
| Q |
318 |
gatttggcggagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcacttggacagcc |
417 |
Q |
| |
|
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| || || |||||||||||||| |||||||| | |
|
|
| T |
1478237 |
gacttggctgagaacaataaaggtgctcgtgtgttggttgtttgttctgaagttactgcagtgacattccgtggtcctagtgatactcatttggacagtc |
1478336 |
T |
|
| Q |
418 |
ttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagatggtttggac |
517 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1478337 |
ttgttggacaagcactatttggagatggtgctgctgcactcattgttggttctgacccaataccagaaattgagaaacctatatttgagatggtttggac |
1478436 |
T |
|
| Q |
518 |
tgcacaaacaattg |
531 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1478437 |
tgcacaaacaattg |
1478450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 531
Target Start/End: Original strand, 1509053 - 1509575
Alignment:
| Q |
9 |
acagaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattag |
108 |
Q |
| |
|
||||| |||||||||||||||||||| | |||||||| || | |||||| ||||||||||||||||||||||||||||| ||| |||||||||| ||| |
|
|
| T |
1509053 |
acagaagagattttgaaagagaatcccaatgtttgtgcttatacggcaccatcattggatgctaggcaagacatggtggttgtaaaggtacctaggctag |
1509152 |
T |
|
| Q |
109 |
ggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctgg |
208 |
Q |
| |
|
| || |||| ||||||||||||||||||||||||||| || ||||| ||||||||||| || |||||| |||||||||| ||||||||||| ||| |||| |
|
|
| T |
1509153 |
gaaaagaggttgcagtgaaggctataaaagaatggggccagccaaaatcaaagattacacatttaatcttttgcaccacaagtggtgttgatatgtctgg |
1509252 |
T |
|
| Q |
209 |
agctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgt |
308 |
Q |
| |
|
|||| |||| ||||| || ||||| |||||||||| |||||||| |||||||| ||||||||||||||| | || ||||| || ||||| ||||||| | |
|
|
| T |
1509253 |
agctcattatcaacttaccaaacttttaggtcttcacccatatgtaaaaaggtacatgatgtaccaacaaaggtgttttgcaggtggcactgtgcttcat |
1509352 |
T |
|
| Q |
309 |
ttggctaaagatttggcggagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcact |
408 |
Q |
| |
|
||||| || |||||||| || || ||| ||| ||||||||||||||||||||||||| |||||| |||||| |||||| | |||||| |||||||||| | |
|
|
| T |
1509353 |
ttggcaaaggatttggctgaaaataaccaagatgctcgtgtgttggttgtttgttctaaagtcattgcagtcacattttgtggccctggtgatactcatt |
1509452 |
T |
|
| Q |
409 |
tggacagccttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagat |
508 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||| | || || |||||||||||||||||| | ||||||||||| |
|
|
| T |
1509453 |
tggacagtcttgttggacaagcattatttggagatggagctgctgcactcattgttggtactgaccctgtaccagaaattgagaaatctatatttgagat |
1509552 |
T |
|
| Q |
509 |
ggtttggactgcacaaacaattg |
531 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1509553 |
ggtttggactgcacaaacaattg |
1509575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 55 - 531
Target Start/End: Original strand, 1499215 - 1499691
Alignment:
| Q |
55 |
caccttcattggatgctaggcaagacatggtggtggtagaggtacctagattagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaa |
154 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
1499215 |
caccttctttggatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaa |
1499314 |
T |
|
| Q |
155 |
gtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctggagctgattaccaactcacaaaactcttaggtcttcgtccatatgtg |
254 |
Q |
| |
|
|||||| ||||| || ||||| |||||||| |||||||| ||||||||||| || ||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
1499315 |
gtcaaatattacacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtg |
1499414 |
T |
|
| Q |
255 |
aaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgtttggctaaagatttggcggagaacaacaaaggtgctcgtgtgttgg |
354 |
Q |
| |
|
|||||||| ||||||||||||| ||| || | ||| || || || || ||||||||||| || || || || ||||| |||||||||||||||||||||| |
|
|
| T |
1499415 |
aaaaggtacatgatgtaccaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttgg |
1499514 |
T |
|
| Q |
355 |
ttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcacttggacagccttgttggacaagcactatttggagatggagctgctgc |
454 |
Q |
| |
|
|||||||||||||| |||||||| | ||||| | || |||||| |||||||| | ||| ||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
1499515 |
ttgtttgttctgaaatcactgcaatctcattttgtggacctagtaatactcacctacacaaacttgttggacaagcaatatttggagatggagctgcggc |
1499614 |
T |
|
| Q |
455 |
actaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagatggtttggactgcacaaacaattg |
531 |
Q |
| |
|
| | |||||||| || || | |||||| |||||||||||||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
1499615 |
agtcattgttggctctgacctagtacctgaaattgagaaacctttatttgagttagtttggactgcacaaacaattg |
1499691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 18 - 529
Target Start/End: Original strand, 1486608 - 1487119
Alignment:
| Q |
18 |
attttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattagggaaggagg |
117 |
Q |
| |
|
||||||||||||||||||| | |||| || ||| ||||||| ||||||||||||||||||||||||||| ||| || ||||| |||| || |||| |
|
|
| T |
1486608 |
attttgaaagagaatcctaatttttgcacttatatgacaccttctttggatgctaggcaagacatggtggtgcgagacgtgcctaggctaggaaatgagg |
1486707 |
T |
|
| Q |
118 |
ctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctggagctgatta |
217 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||| ||||||| | | ||||||||| || ||||| |
|
|
| T |
1486708 |
ctgcagtgaaagctataaaagaatagggccaaccaaagtcaaagattacacacttaatattttgcaccatgagtggtataggcatgcctggtgccgatta |
1486807 |
T |
|
| Q |
218 |
ccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgtttggctaaa |
317 |
Q |
| |
|
||||||||||||||||||||||||| | || |||||||| |||||||||| ||||||||||| |||||||| || ||||| || || |||| ||| || |
|
|
| T |
1486808 |
ccaactcacaaaactcttaggtctttgcccggatgtgaaacggtatatgatataccaacaaggatgctttgcagggggcactgttctacgttaggccaag |
1486907 |
T |
|
| Q |
318 |
gatttggcggagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcagttac-atttcgcggccctagtgatactcacttggacagc |
416 |
Q |
| |
|
|| ||||| |||||||| |||| ||||| ||||||||| | ||||||||||||||| || | || |||| | ||||||| ||| ||| || || || | |
|
|
| T |
1486908 |
gacttggctgagaacaataaagatgctcttgtgttggtaatatgttctgaagtcactaca-tcactattttgtggccctaatgaaactgacatgagcaac |
1487006 |
T |
|
| Q |
417 |
cttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagatggtttgga |
516 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| || | | |||||||| || ||||| || || ||||||||||||| | |||||| | ||||||| |
|
|
| T |
1487007 |
cttgttggacaagcattatttggtgatggagctgttgtagtcattgttggctccgatccgatatcaaaaattgagaaacctctctttgagcttgtttgga |
1487106 |
T |
|
| Q |
517 |
ctgcacaaacaat |
529 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1487107 |
ctgcacaaacaat |
1487119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 51 - 529
Target Start/End: Complemental strand, 24163941 - 24163463
Alignment:
| Q |
51 |
atggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattagggaaggaggctgcagtgaaggctataaaagaatggggtcaac |
150 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||| ||||||| ||| ||| |||| |||||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
24163941 |
atggcaccttctttggatactaggcaagacatggtggtagtagaggcaccaagactaggaaaggaggcagccgtgaaggctataaaagaatggggccaac |
24163842 |
T |
|
| Q |
151 |
caaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctggagctgattaccaactcacaaaactcttaggtcttcgtccata |
250 |
Q |
| |
|
||||||||||||| || |||||||| ||||||| | |||||||| || |||||||| || |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24163841 |
caaagtcaaagatcacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtcttcgcccatg |
24163742 |
T |
|
| Q |
251 |
tgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgtttggctaaagatttggcggagaacaacaaaggtgctcgtgtg |
350 |
Q |
| |
|
||| |||||||||||||||||||||||||| || ||||| || |||||||| ||||| ||||| || || ||||| ||||||||||||||| |||||||| |
|
|
| T |
24163741 |
tgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaaggttctcgtgtg |
24163642 |
T |
|
| Q |
351 |
ttggttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcacttggacagccttgttggacaagcactatttggagatggagctg |
450 |
Q |
| |
|
|||||||||||||||||||| || ||| | |||||| | || || || ||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24163641 |
ttggttgtttgttctgaagttaccgcaatcacattttgtggaccaagcgatactcacttagacaaccttgttggacaagctctatttggagatggagctg |
24163542 |
T |
|
| Q |
451 |
ctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagatggtttggactgcacaaacaat |
529 |
Q |
| |
|
||||| | |||||||| || || ||| ||| |||||||||||||| |||||||| | |||||||| ||||||||||| |
|
|
| T |
24163541 |
ctgcagtcattgttggctctgacccaatacaggaaattgagaaacctctatttgagttagtttggacagcacaaacaat |
24163463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 8e-94; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 15 - 529
Target Start/End: Complemental strand, 37863577 - 37863063
Alignment:
| Q |
15 |
gagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattagggaagg |
114 |
Q |
| |
|
||||||||||| |||||||||||| | |||||||| ||||||||||| |||||||| || || || |||||||| || || ||||| | |||| || | |
|
|
| T |
37863577 |
gagattttgaaggagaatcctagtttatgtgagtatatggcaccttcgttggatgcaagacaggatatggtggttgtggaagtaccaaagctaggaaaag |
37863478 |
T |
|
| Q |
115 |
aggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctggagctga |
214 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||| ||||||||||||||||| |||| |||||||||| |||||||| || |||||||| ||||| |
|
|
| T |
37863477 |
aggctgcaacaaaggctatcaaggaatggggtcaacctaagtcaaagattactcatctaattttttgcaccacaagtggtgtggatatgcctggtgctga |
37863378 |
T |
|
| Q |
215 |
ttaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgtttggct |
314 |
Q |
| |
|
|| || |||||||| ||||| |||||||| || |||||||| | ||||||||||| ||||||||||| ||||| || || |||||||||||||||||| |
|
|
| T |
37863377 |
ctatcagctcacaaagctcttgggtcttcgcccgtatgtgaagcgttatatgatgtatcaacaaggttgttttgctggtgggacggtgcttcgtttggct |
37863278 |
T |
|
| Q |
315 |
aaagatttggcggagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcacttggaca |
414 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||| ||||| |||||||| || ||||||||||||| || || || |||||||||||||| | || | |
|
|
| T |
37863277 |
aaagatttggctgaaaacaacaaaggcgctcgtgttttggtggtttgttcggagatcactgcagttactttccgtggacctagtgatactcatcttgata |
37863178 |
T |
|
| Q |
415 |
gccttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagatggtttg |
514 |
Q |
| |
|
| ||||| || || ||| | ||||||||||| || || || | ||||||||||||||||| | |||||| ||||||| || | ||||| ||||||| |
|
|
| T |
37863177 |
gtcttgtggggcaggcattgtttggagatggtgcagcagctgtgattgttggttcagatccgttgccagaagttgagaagcctttgtttgaattggtttg |
37863078 |
T |
|
| Q |
515 |
gactgcacaaacaat |
529 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37863077 |
gactgcacaaacaat |
37863063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 9 - 526
Target Start/End: Complemental strand, 37859557 - 37859040
Alignment:
| Q |
9 |
acagaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattag |
108 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||| || |||||||||||||||||||||||||| || |||||||||||||| || |||||||| ||| ||| |
|
|
| T |
37859557 |
acagaagagatcctgaaagagaatccaagtgtatgcgagtacatggcaccttcattggatgcaagacaagacatggtggttgtggaggtaccaagactag |
37859458 |
T |
|
| Q |
109 |
ggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctgg |
208 |
Q |
| |
|
| || ||||| ||| ||||| || || |||||||||||||| ||||| |||||||| ||| | ||| |||||||||| ||||| || |||||||| || |
|
|
| T |
37859457 |
gaaaagaggcagcaacaaaggccatcaaggaatggggtcaacctaagtccaagattacccacctcatcttttgcaccaccagtggcgtggacatgcccgg |
37859358 |
T |
|
| Q |
209 |
agctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgt |
308 |
Q |
| |
|
|| || || || || ||||| ||||| || ||||||||||||||||| | || |||||||||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
37859357 |
tgccgactatcagctgacaaagctcttgggccttcgtccatatgtgaagcgttacatgatgtaccaacaaggttgttttgctggtggcacggtgcttcgt |
37859258 |
T |
|
| Q |
309 |
ttggctaaagatttggcggagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcact |
408 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||||||||||| |||||||| || | ||||||||||| || || || || ||||| ||||| |
|
|
| T |
37859257 |
ttggctaaagacttggctgaaaacaacaaaggtgctcgtgtgttggtagtttgttcagagataactgcagttactttccgtggacccagtgacactcatc |
37859158 |
T |
|
| Q |
409 |
tggacagccttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccagtaccagaaattgagaaaccaatatttgagat |
508 |
Q |
| |
|
| || |||||||| || |||||| | ||||||||||| || || || | || || |||||||| ||| ||||| || |||||||||| | ||||| | |
|
|
| T |
37859157 |
ttgatagccttgtggggcaagcattgtttggagatggtgcagcagctgtgatcgtaggttcagacccattaccacaagttgagaaacccttgtttgaatt |
37859058 |
T |
|
| Q |
509 |
ggtttggactgcacaaac |
526 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
37859057 |
ggtatggactgcacaaac |
37859040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 556 - 667
Target Start/End: Complemental strand, 49625998 - 49625887
Alignment:
| Q |
556 |
taattggagaggttaccttaccctaccctagtgcgcactggctggctagagatttgtccgagaatcgagggagggacttgaataattttggcagtatata |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49625998 |
taattggagaggttaccttaccctaccctagtgcgcactggctggctagagatttgtccgagaatcgagggagggacttgaataattttggcagtatata |
49625899 |
T |
|
| Q |
656 |
aagccaccataa |
667 |
Q |
| |
|
|||||||||||| |
|
|
| T |
49625898 |
aagccaccataa |
49625887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 21 - 353
Target Start/End: Original strand, 39030012 - 39030344
Alignment:
| Q |
21 |
ttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattagggaaggaggctg |
120 |
Q |
| |
|
||||| |||||||| ||| ||||||||| ||||||||||| |||||||| || || ||||| ||||| | || ||||| | | || || || || | |
|
|
| T |
39030012 |
ttgaaggagaatccaagtttttgtgagtttatggcaccttctttggatgcaagacaggacattgtggttgaggaagtaccaaagctcggaaaagaagcag |
39030111 |
T |
|
| Q |
121 |
cagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctggagctgattacca |
220 |
Q |
| |
|
|| | |||||||| || |||||||||||||| ||||||| | ||||||| | || ||||||| | |||||||| || |||||||||||||| || || |
|
|
| T |
39030112 |
caataaaggctatcaatgaatggggtcaacctaagtcaatggttactcatctcatattttgcacttcaagtggtgtcgatatgcctggagctgactatca |
39030211 |
T |
|
| Q |
221 |
actcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgtttggctaaagat |
320 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||| || | ||||||||||||||||||||||| ||||| || | | || ||||| |||||||||||| |
|
|
| T |
39030212 |
gctcacaaagctcttaggcctttgtccatatgtaaagcgttatatgatgtaccaacaaggttgttttgctggtgcgatggctcttcgcttggctaaagat |
39030311 |
T |
|
| Q |
321 |
ttggcggagaacaacaaaggtgctcgtgtgttg |
353 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| |
|
|
| T |
39030312 |
ttggctgagaacaacaaaggtgcccgtgtgttg |
39030344 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 9 - 451
Target Start/End: Original strand, 35250740 - 35251182
Alignment:
| Q |
9 |
acagaggagattttgaaagagaatcctagtgtttgtgagtacatggcaccttcattggatgctaggcaagacatggtggtggtagaggtacctagattag |
108 |
Q |
| |
|
|||||||| ||| ||||||| ||||| | | | |||| ||||||||||| ||||||||||| || ||||| |||||||| |||||||| || || |||| |
|
|
| T |
35250740 |
acagaggaaattctgaaagaaaatcccaatatgtgtgcttacatggcaccatcattggatgcaagacaagatatggtggtagtagaggtgccaaggttag |
35250839 |
T |
|
| Q |
109 |
ggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacgagtggtgttgacatgcctgg |
208 |
Q |
| |
|
| || || || ||| || || || || |||||||||||||||||||| ||||| |||||| | || |||||| || |||||||| || |||||||| |
|
|
| T |
35250840 |
gaaaagaagcagcaacaaaagcgatcaaggaatggggtcaaccaaagtccaagatcactcacctcatattttgcattactagtggtgtggatatgcctgg |
35250939 |
T |
|
| Q |
209 |
agctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgccggaggcacggtgcttcgt |
308 |
Q |
| |
|
|||||||| || ||||||||| | |||| |||||||| | |||||| | |||||||||||||||||||| || || || || || | ||| |||||| |
|
|
| T |
35250940 |
tgctgattatcagctcacaaaattgctaggacttcgtccgtcggtgaaacgttatatgatgtaccaacaagggtgtttcgctggtggtatggttcttcgt |
35251039 |
T |
|
| Q |
309 |
ttggctaaagatttggcggagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcactgcagttacatttcgcggccctagtgatactcact |
408 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||| | || |||||||| || |||||||||| || ||||| ||||||||||| || || |
|
|
| T |
35251040 |
ttggctaaagatttggctgagaacaataaaggtgctcgtgttcttgtggtttgttcagagatcactgcagtgacttttcgtggccctagtgacacccatc |
35251139 |
T |
|
| Q |
409 |
tggacagccttgttggacaagcactatttggagatggagctgc |
451 |
Q |
| |
|
| || || || || ||||||||| | ||||||||||| ||||| |
|
|
| T |
35251140 |
ttgatagtctcgtgggacaagcattgtttggagatggcgctgc |
35251182 |
T |
|
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