View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-17-LTR4-TNT-insertion-5 (Length: 649)
Name: Tnk88-17-LTR4-TNT-insertion-5
Description: Tnk88-17-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-17-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 12 - 639
Target Start/End: Complemental strand, 129483 - 128856
Alignment:
| Q |
12 |
tccaagcttttaatatcttcagtgaaggtcgatccaagagttggtggagctttatggtaggatatgagctgaaaatcannnnnnncctccttcaaccttg |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| |
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| T |
129483 |
tccaagcttttaatatcttcagtgaaggtcgatccaagagttggtggagctttatggtaggatatgagctgaaactcatttttttcctccttcaactttg |
129384 |
T |
|
| Q |
112 |
taatatactcaatgcttttagaggcttgctttcccaatgagtaattatatgtcaaatttggacactttccaccaaaacatttcttgttcattttaacttt |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
129383 |
taatatactcaatgcttttagaggcttgctttcccaatgagtaattatatgtcaaatttggacactttccaccaaaacatttcttgttcattttaacttt |
129284 |
T |
|
| Q |
212 |
gtcttcatagaaactttttaacacattttcaaaagctgcaacatcatttagccaattttgtatgttaggttcaattccttctctattcattctttttgtg |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
129283 |
gtcttcatagaaactttttaacacattttcaaaagctgcaacatcatttagccaattttgtatgttaggttcaattccttctctattcattctttttgtg |
129184 |
T |
|
| Q |
312 |
tccacccatccttgtagtgcttctttaacaccctccaacttatcgtgttcttccttcaactcggcaataannnnnnngtagtgagtcatatattcaatct |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| |
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| T |
129183 |
tccacccatccttgtagtgcttctttaacaccctccaacttatcgtgttcttcctccaagtcggcaataatttttttgtagtgagtcatatattcaatct |
129084 |
T |
|
| Q |
412 |
gcttcaccgtagactccactgccaattctccaagctttgagatagcttcttttgctagttcagtaagaaactccatcttctctgaaccatttatgaaagg |
511 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
129083 |
gcttcaacgtagactccactgccaattctccaagctttgagatagcttcttttgctagttcagtaagaaactccatcttctctgaaccatttatgaaagg |
128984 |
T |
|
| Q |
512 |
gaatacaaagaaggtagagaacaatgtgttagatctaattttttgcagataattacaaagataaaaatagtactattacaaatagacattaaggtaagta |
611 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
128983 |
gaatacaaagaaggtagagaacaatgtgttagatctaattttttgtagataattacaaagataaaaatagtactattataaatagacattaaggtaagta |
128884 |
T |
|
| Q |
612 |
ggacaaacaatgccatattctttgaatt |
639 |
Q |
| |
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||||||||||| |||||||||||||||| |
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| T |
128883 |
ggacaaacaattccatattctttgaatt |
128856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 12 - 490
Target Start/End: Original strand, 34555313 - 34555791
Alignment:
| Q |
12 |
tccaagcttttaatatcttcagtgaaggtcgatccaagagttggtggagctttatggtaggatatgagctgaaaatcannnnnnncctccttcaaccttg |
111 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||| |
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| T |
34555313 |
tccaagctcttaatatcttcagtgaaggtggatccaagagttggtggagctttatggtaggatatgagctggaattcatttttttcctccttcaacctta |
34555412 |
T |
|
| Q |
112 |
taatatactcaatgcttttagaggcttgctttcccaatgagtaattatatgtcaaatttggacactttccaccaaaacatttcttgttcattttaacttt |
211 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34555413 |
taatatattcaatgcttttagaggcttgctttcccaatgagtaattatatgtcaaatttggacactttccaccaaaacatttcttgttcatcttaacttt |
34555512 |
T |
|
| Q |
212 |
gtcttcatagaaactttttaacacattttcaaaagctgcaacatcatttagccaattttgtatgttaggttcaattccttctctattcattctttttgtg |
311 |
Q |
| |
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||||| |||||||||| ||||||||||||||| |||||||| ||||| ||||| |||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
34555513 |
ttcttcgtagaaactttgtaacacattttcaaatgctgcaacgtcattgagccacttttctatgttaggttcagttccttctctattcattctttttgtg |
34555612 |
T |
|
| Q |
312 |
tccacccatccttgtagtgcttctttaacaccctccaacttatcgtgttcttccttcaactcggcaataannnnnnngtagtgagtcatatattcaatct |
411 |
Q |
| |
|
|| |||||| ||||||| |||||||| ||||||| |||||||| ||||||||||||||| |||||||||| || || ||| |||||||| || |
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| T |
34555613 |
tcaacccatgcttgtagagcttctttgacacccttcaacttattgtgttcttccttcaagtcggcaataatttgtttgtgctggatcacatattcaaact |
34555712 |
T |
|
| Q |
412 |
gcttcaccgtagactccactgccaattctccaagctttgagatagcttcttttgctagttcagtaagaaactccatctt |
490 |
Q |
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||||||| ||||||| |||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
34555713 |
gcttcactgtagactgcactgccaattctccaagttttgagacagcttcttttgatagttcagtaagaaactccatctt |
34555791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 502 - 596
Target Start/End: Original strand, 34555820 - 34555915
Alignment:
| Q |
502 |
ttatgaaagggaatacaaagaaggtagagaacaatgtgttagatctaattt-tttgcagataattacaaagataaaaatagtactattacaaatag |
596 |
Q |
| |
|
|||||| ||| || ||||| |||| | |||| ||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
34555820 |
ttatgataggcaaaacaaacaaggaacagaaaaatgtgttagatctaatatatttttagataattacaaagataaaaataatactattataaatag |
34555915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 34371096 - 34370995
Alignment:
| Q |
135 |
gcttgctttcccaatgagtaattatatgtcaaatttggacactttccaccaaaacatttcttgttcattttaactttgtcttcatagaaactttttaaca |
234 |
Q |
| |
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|||||||| |||| ||||||||| ||| |||||| ||||| || | ||| || ||||||||| | |||||||||| |||||||||||||| ||||| |
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| T |
34371096 |
gcttgcttacccagtgagtaattgaatgcaaaatttatacactggccccaaaagcacttcttgttcttgttaactttgttttcatagaaactttctaaca |
34370997 |
T |
|
| Q |
235 |
ca |
236 |
Q |
| |
|
|| |
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|
| T |
34370996 |
ca |
34370995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 34292519 - 34292591
Alignment:
| Q |
99 |
tccttcaaccttgtaatatactcaatgcttttagaggcttgctttcccaatgagtaattatatgtcaaatttg |
171 |
Q |
| |
|
||||||| |||||||||| |||| |||||||| ||||| |||||||||||| |||||| ||| ||||||| |
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|
| T |
34292519 |
tccttcatgcttgtaatattttcaaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttg |
34292591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 34567067 - 34567139
Alignment:
| Q |
99 |
tccttcaaccttgtaatatactcaatgcttttagaggcttgctttcccaatgagtaattatatgtcaaatttg |
171 |
Q |
| |
|
||||||| |||||||||| |||| |||||||| ||||| |||||||||||| |||||| ||| ||||||| |
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|
| T |
34567067 |
tccttcatgcttgtaatattttcaaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttg |
34567139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 15896741 - 15896840
Alignment:
| Q |
97 |
cctccttcaaccttgtaatatactcaatgcttttagaggcttgctttcccaatgagtaattatatgtcaaatttggacactttccaccaaaacatttctt |
196 |
Q |
| |
|
||||||||| ||||||||||| || || ||||||| |||||||||||||||||||||||| ||| | || || ||| | |||||||||||||||||| |
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|
| T |
15896741 |
cctccttcaggcttgtaatatattctatccttttagttgcttgctttcccaatgagtaattaaatgctatatctgaacattgtccaccaaaacatttctt |
15896840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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