View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk88-17-LTR4-TNT-insertion-6 (Length: 224)

Name: Tnk88-17-LTR4-TNT-insertion-6
Description: Tnk88-17-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk88-17-LTR4-TNT-insertion-6
Tnk88-17-LTR4-TNT-insertion-6
[»] chr2 (11 HSPs)
chr2 (147-214)||(42849428-42849495)
chr2 (8-70)||(42849283-42849345)
chr2 (147-214)||(39629444-39629511)
chr2 (147-213)||(39628797-39628863)
chr2 (147-214)||(2477886-2477953)
chr2 (8-70)||(39629303-39629365)
chr2 (147-214)||(2477262-2477329)
chr2 (147-214)||(42848776-42848843)
chr2 (147-214)||(13327803-13327870)
chr2 (147-214)||(13328741-13328808)
chr2 (158-214)||(44926700-44926757)
[»] chr1 (18 HSPs)
chr1 (8-70)||(47374247-47374309)
chr1 (8-69)||(5496749-5496810)
chr1 (147-214)||(10716730-10716797)
chr1 (152-214)||(5496604-5496666)
chr1 (147-214)||(47374103-47374170)
chr1 (147-214)||(7012023-7012090)
chr1 (147-214)||(7012965-7013032)
chr1 (147-206)||(10716855-10716914)
chr1 (147-214)||(39847866-39847933)
chr1 (147-214)||(39848807-39848874)
chr1 (152-214)||(47374778-47374840)
chr1 (147-207)||(42987012-42987072)
chr1 (155-206)||(51445535-51445586)
chr1 (158-205)||(14886220-14886267)
chr1 (158-205)||(21790818-21790865)
chr1 (158-205)||(26896536-26896583)
chr1 (158-205)||(42986824-42986871)
chr1 (158-205)||(47052412-47052459)
[»] chr4 (12 HSPs)
chr4 (8-69)||(45920075-45920136)
chr4 (147-214)||(41696050-41696117)
chr4 (147-215)||(29212052-29212120)
chr4 (147-214)||(45919570-45919637)
chr4 (147-214)||(45920217-45920284)
chr4 (147-214)||(41695443-41695510)
chr4 (147-214)||(46619557-46619624)
chr4 (147-214)||(31915222-31915289)
chr4 (152-214)||(46618409-46618471)
chr4 (9-44)||(46618919-46618954)
chr4 (158-207)||(24377890-24377939)
chr4 (158-206)||(4158552-4158600)
[»] chr3 (14 HSPs)
chr3 (8-70)||(20200434-20200496)
chr3 (8-70)||(20202618-20202680)
chr3 (152-214)||(53949397-53949459)
chr3 (147-214)||(20200538-20200605)
chr3 (147-214)||(20202722-20202789)
chr3 (147-214)||(47169087-47169154)
chr3 (152-214)||(53950012-53950074)
chr3 (152-214)||(47167946-47168008)
chr3 (161-206)||(11238583-11238628)
chr3 (152-214)||(20199926-20199986)
chr3 (152-214)||(20202114-20202174)
chr3 (158-205)||(41710137-41710184)
chr3 (9-44)||(47168451-47168486)
chr3 (158-206)||(24485896-24485944)
[»] chr8 (12 HSPs)
chr8 (147-214)||(29361873-29361940)
chr8 (147-214)||(5330953-5331020)
chr8 (152-214)||(5332108-5332170)
chr8 (147-207)||(42987407-42987467)
chr8 (152-214)||(29267792-29267854)
chr8 (165-207)||(37437961-37438003)
chr8 (158-214)||(29266221-29266277)
chr8 (9-44)||(5331399-5331434)
chr8 (9-44)||(29267311-29267346)
chr8 (158-205)||(36732025-36732072)
chr8 (158-204)||(5881201-5881247)
chr8 (147-207)||(42986712-42986772)
[»] chr7 (19 HSPs)
chr7 (147-214)||(8513393-8513460)
chr7 (9-68)||(8487237-8487297)
chr7 (9-68)||(8512911-8512971)
chr7 (147-214)||(8487738-8487805)
chr7 (147-214)||(38059906-38059973)
chr7 (147-214)||(8487088-8487155)
chr7 (147-214)||(8512763-8512830)
chr7 (152-214)||(28451183-28451245)
chr7 (147-214)||(31178699-31178766)
chr7 (161-212)||(31179863-31179914)
chr7 (152-214)||(25245596-25245658)
chr7 (161-214)||(43742779-43742832)
chr7 (158-214)||(21866324-21866380)
chr7 (158-205)||(3474970-3475017)
chr7 (9-44)||(31179374-31179409)
chr7 (9-44)||(38060504-38060539)
chr7 (158-205)||(43334667-43334714)
chr7 (155-205)||(3163435-3163485)
chr7 (147-207)||(21865632-21865692)
[»] chr5 (8 HSPs)
chr5 (147-214)||(21145995-21146062)
chr5 (147-214)||(21148027-21148094)
chr5 (147-214)||(23206124-23206191)
chr5 (147-214)||(42521621-42521688)
chr5 (147-214)||(42520676-42520743)
chr5 (9-44)||(21146441-21146476)
chr5 (158-204)||(42520372-42520418)
chr5 (158-214)||(31219930-31219986)
[»] scaffold0009 (3 HSPs)
scaffold0009 (152-214)||(105569-105631)
scaffold0009 (9-68)||(106080-106140)
scaffold0009 (152-214)||(106224-106286)
[»] scaffold0853 (2 HSPs)
scaffold0853 (147-210)||(2254-2317)
scaffold0853 (166-214)||(674-722)
[»] scaffold0188 (1 HSPs)
scaffold0188 (152-214)||(25673-25735)
[»] chr6 (1 HSPs)
chr6 (164-205)||(18154410-18154451)


Alignment Details
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 42849428 - 42849495
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42849428 tgggtcacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 42849495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 42849283 - 42849345
Alignment:
Q  8 gtaagttctttatgcaatgttgtgagtaattcatacctaagaataaaagatgtagaatccttt 70  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42849283 gtaagttctttatgcaatgttgtgagtaattcataccaaagaataaaagatgtagaatccttt 42849345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 39629444 - 39629511
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  39629444 tgggtcacttaatcaagcatgtgagcacttaatgaattgatgagagccgttagattaaaactgtatta 39629511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 39628863 - 39628797
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatt 213  Q
    |||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39628863 tgggtcacttgatcaagcatgtgagcacttaatgaattgatggaagccgttagattaaaaccgtatt 39628797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 2477886 - 2477953
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  2477886 tgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagattaaaaccgtatta 2477953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 39629303 - 39629365
Alignment:
Q  8 gtaagttctttatgcaatgttgtgagtaattcatacctaagaataaaagatgtagaatccttt 70  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  39629303 gtaagttctttatgtaatgttgtgagtaattcatacttaagaataaaaaatgtagaatccttt 39629365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 2477329 - 2477262
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||||||||||||| || |||| ||||||||||||||||||||||||    
T  2477329 tgggtcacttgatcaagcatgtgagcacttaatgagtttatggaagccgttagattaaaaccgtatta 2477262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 42848843 - 42848776
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||    
T  42848843 tgggtcacttgatcaagcatgtgaacacttaatgaattgatgggagtcgttagattaaaaccatatta 42848776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 13327870 - 13327803
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| ||||||||||||||| || ||||| || || ||||||||||||||||||||||||||    
T  13327870 tgggtcacttgatcaagcatgtgagcgctcaatgagtttatcggagccgttagattaaaaccgtatta 13327803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 13328741 - 13328808
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||||||||||| | || |||| || |||||||||||| ||||||||    
T  13328741 tgggtcacttgatcaagcatgtgagcacttaataagtttatggaagtcgttagattaaacccgtatta 13328808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 44926757 - 44926700
Alignment:
Q  158 atcaagcatgtgagcactt-aatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||||| |||||||||||| ||||||||||| ||| |||||| |||||||| ||||||    
T  44926757 atcaagtatgtgagcactttaatgaattgattggaaccgttaaattaaaactgtatta 44926700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 47374309 - 47374247
Alignment:
Q  8 gtaagttctttatgcaatgttgtgagtaattcatacctaagaataaaagatgtagaatccttt 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47374309 gtaagttctttatgcaatgttgtgagtaattcatacctaagaataaaagatgtagaatccttt 47374247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 5496810 - 5496749
Alignment:
Q  8 gtaagttctttatgcaatgttgtgagtaattcatacctaagaataaaagatgtagaatcctt 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5496810 gtaagttctttatgcaatgttgtgagtaattcatacctaagaataaaagatgtagaatcctt 5496749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 10716797 - 10716730
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10716797 tgggtcacttgatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaatcgtatta 10716730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 5496666 - 5496604
Alignment:
Q  152 cacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5496666 cacttaatcaggcatgtgagcacttaatgaattgatgggagccgttatattaaaaccgtatta 5496604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 47374170 - 47374103
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  47374170 tgggtcacttgatcaagcatgtgagcacttaatgaattgatggaagccgttagattaaaactgtatta 47374103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 7012090 - 7012023
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||||||||||||| || |||||||||||||||||||| ||| ||||    
T  7012090 tgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagattaaacccgaatta 7012023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 7012965 - 7013032
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||||||| ||||| || || ||||||||||||||||||||||||||    
T  7012965 tgggtcacttgatcaagcatgtgagcactcaatgagtttatcggagccgttagattaaaaccgtatta 7013032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 10716855 - 10716914
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaa 206  Q
    |||| ||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  10716855 tgggtcacttgatcaagcatgtgagcacttaatgaattgatgcgagctgttagattaaaa 10716914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 39847933 - 39847866
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| ||||||||||||| |||||||||| || ||| |||||||||||||||||||||||||    
T  39847933 tgggtcacttgatcaagcatgtgaacacttaatgagtttatgagagccgttagattaaaaccgtatta 39847866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 39848807 - 39848874
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||||||||||||| || ||| |||||||||||||||||| ||||||    
T  39848807 tgggtcacttgatcaagcatgtgagcacttaatgagtttatgagagccgttagattaaaactgtatta 39848874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 47374778 - 47374840
Alignment:
Q  152 cacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    ||||| ||||||||||||||||||||||||||| ||  |||||||||||||||||| ||||||    
T  47374778 cacttgatcaagcatgtgagcacttaatgaattaataagagccgttagattaaaacagtatta 47374840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 42987012 - 42987072
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaac 207  Q
    |||| ||||| ||||||||||||| ||||||||||||||||| || || ||||||||||||    
T  42987012 tgggtcacttgatcaagcatgtgaacacttaatgaattgatgtgaacctttagattaaaac 42987072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 51445586 - 51445535
Alignment:
Q  155 ttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaa 206  Q
    |||||||||||||||||||||||| ||||||||   ||||||||||||||||    
T  51445586 ttaatcaagcatgtgagcacttaacgaattgattaaagccgttagattaaaa 51445535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 14886267 - 14886220
Alignment:
Q  158 atcaagcatgtgagcacttaatgaattgatgggagccgttagattaaa 205  Q
    |||||||||||||||| |||||||||||||| ||| ||| ||||||||    
T  14886267 atcaagcatgtgagcatttaatgaattgatgagagacgtcagattaaa 14886220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 21790865 - 21790818
Alignment:
Q  158 atcaagcatgtgagcacttaatgaattgatgggagccgttagattaaa 205  Q
    |||||||||||||| | |||||||||||||| ||| ||||||||||||    
T  21790865 atcaagcatgtgagaatttaatgaattgatgagagacgttagattaaa 21790818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 26896583 - 26896536
Alignment:
Q  158 atcaagcatgtgagcacttaatgaattgatgggagccgttagattaaa 205  Q
    |||||||||||||||| |||||||||||||| ||| |||| |||||||    
T  26896583 atcaagcatgtgagcatttaatgaattgatgagagacgttggattaaa 26896536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 42986871 - 42986824
Alignment:
Q  158 atcaagcatgtgagcacttaatgaattgatgggagccgttagattaaa 205  Q
    ||||| ||||||||||||||||||||| ||| ||||| ||||||||||    
T  42986871 atcaaacatgtgagcacttaatgaattaatgagagccattagattaaa 42986824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 47052459 - 47052412
Alignment:
Q  158 atcaagcatgtgagcacttaatgaattgatgggagccgttagattaaa 205  Q
    |||||||||||||||| |||||||||||||| ||| |||| |||||||    
T  47052459 atcaagcatgtgagcatttaatgaattgatgagagacgttggattaaa 47052412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 45920075 - 45920136
Alignment:
Q  8 gtaagttctttatgcaatgttgtgagtaattcatacctaagaataaaagatgtagaatcctt 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45920075 gtaagttctttatgcaatgttgtgagtaattcatacctaagaataaaagatgtagaatcctt 45920136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 41696050 - 41696117
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41696050 tgggtcacttgatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 41696117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 29212120 - 29212052
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtattag 215  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29212120 tgggtcacttgatcaagcatgtgagcacttaatgaattgatgggagctgttagattaaaaccgtattag 29212052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 45919637 - 45919570
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45919637 tgggtcacttgatcaagcatgtgagcacttaatgaattgatgagagccgttagattaaaaccgtatta 45919570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 45920217 - 45920284
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45920217 tgggtcacttgatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaactgtatta 45920284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 41695510 - 41695443
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||||||||| ||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  41695510 tgggccacttgatcaaacatgtgaacacttaatgaattgatggaagccgttagattaaaaccgtatta 41695443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 46619557 - 46619624
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  46619557 tgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagattaaaaccgtatta 46619624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 31915289 - 31915222
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| |||||||||||| ||||||||||||||| |||| ||| || ||||||||||||||||||||||    
T  31915289 tgggtcacttaatcaagtatgtgagcacttaataaattaatgagaaccgttagattaaaaccgtatta 31915222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 46618471 - 46618409
Alignment:
Q  152 cacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    ||||| ||||| |||||||||||||||||| || ||| || ||||||||||||||||||||||    
T  46618471 cacttgatcaaacatgtgagcacttaatgagtttatgagaaccgttagattaaaaccgtatta 46618409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 46618919 - 46618954
Alignment:
Q  9 taagttctttatgcaatgttgtgagtaattcatacc 44  Q
    |||||||||||||||||||| |||||||||||||||    
T  46618919 taagttctttatgcaatgttatgagtaattcatacc 46618954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 24377890 - 24377939
Alignment:
Q  158 atcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaac 207  Q
    ||||||||||||| ||||||| ||||||||  |||| |||||||||||||    
T  24377890 atcaagcatgtgatcacttaacgaattgattagagctgttagattaaaac 24377939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 4158552 - 4158600
Alignment:
Q  158 atcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaa 206  Q
    ||||| |||||||||||||||| |||| |||| | ||||||||||||||    
T  4158552 atcaaacatgtgagcacttaataaattaatggaaaccgttagattaaaa 4158600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 20200434 - 20200496
Alignment:
Q  8 gtaagttctttatgcaatgttgtgagtaattcatacctaagaataaaagatgtagaatccttt 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20200434 gtaagttctttatgcaatgttgtgagtaattcatacctaagaataaaatatgtagaatccttt 20200496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 20202618 - 20202680
Alignment:
Q  8 gtaagttctttatgcaatgttgtgagtaattcatacctaagaataaaagatgtagaatccttt 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20202618 gtaagttctttatgcaatgttgtgagtaattcatacctaagaataaaatatgtagaatccttt 20202680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 53949459 - 53949397
Alignment:
Q  152 cacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53949459 cacttgatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 53949397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 20200538 - 20200605
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  20200538 tgggtcacttaatcaagcatgtgaacacttagtgaattgatgggagccgttagattaaaaccgtatta 20200605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 20202722 - 20202789
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  20202722 tgggtcacttaatcaagcatgtgaacacttagtgaattgatgggagccgttagattaaaaccgtatta 20202789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 47169087 - 47169154
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  47169087 tgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagattaaaaccgtatta 47169154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 53950012 - 53950074
Alignment:
Q  152 cacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  53950012 cacttgatcaaacatgtgagcacttaatgaattgatggaagccgttagattaagcccgtatta 53950074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 47168008 - 47167946
Alignment:
Q  152 cacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    ||||| |||||||||||||||||||||||| || | | || ||||||||||||||||||||||    
T  47168008 cacttgatcaagcatgtgagcacttaatgagtttacgagaaccgttagattaaaaccgtatta 47167946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 11238628 - 11238583
Alignment:
Q  161 aagcatgtgagcacttaatgaattgatgggagccgttagattaaaa 206  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||    
T  11238628 aagcatgtgagcacttaatgaattgatgggaaccgttagatgaaaa 11238583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 20199986 - 20199926
Alignment:
Q  152 cacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    ||||| ||||| ||||| ||||||  |||||||||||| ||||||||||||||||||||||||    
T  20199986 cacttgatcaaacatgtaagcact--atgaattgatggaagccgttagattaaaaccgtatta 20199926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 20202174 - 20202114
Alignment:
Q  152 cacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    ||||| ||||| ||||| ||||||  |||||||||||| ||||||||||||||||||||||||    
T  20202174 cacttgatcaaacatgtaagcact--atgaattgatggaagccgttagattaaaaccgtatta 20202114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 41710137 - 41710184
Alignment:
Q  158 atcaagcatgtgagcacttaatgaattgatgggagccgttagattaaa 205  Q
    |||||||||||||||| |||||||||||||| ||| |||| |||||||    
T  41710137 atcaagcatgtgagcatttaatgaattgatgagagacgttggattaaa 41710184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 47168451 - 47168486
Alignment:
Q  9 taagttctttatgcaatgttgtgagtaattcatacc 44  Q
    |||||||||||||||||||| |||||||||||||||    
T  47168451 taagttctttatgcaatgttatgagtaattcatacc 47168486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 24485896 - 24485944
Alignment:
Q  158 atcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaa 206  Q
    ||||| ||||| | |||||||||||||||||| | ||||||||||||||    
T  24485896 atcaaacatgtaaccacttaatgaattgatggaaaccgttagattaaaa 24485944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 29361940 - 29361873
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29361940 tgggtcacttgatcaagcatgttagcacttaatgaattgatgggagccgttagattaaaaccgtatta 29361873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 5331020 - 5330953
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  5331020 tgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagattaaaaccgtatta 5330953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 5332108 - 5332170
Alignment:
Q  152 cacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    ||||| ||||||||||||||| |||||||| || |||||||||||||||||||||||||||||    
T  5332108 cacttgatcaagcatgtgagctcttaatgagtttatgggagccgttagattaaaaccgtatta 5332170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 42987407 - 42987467
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaac 207  Q
    |||| ||||| ||||||||| ||||||||||||||||||||| || || ||||||||||||    
T  42987407 tgggtcacttgatcaagcatatgagcacttaatgaattgatgtgaacctttagattaaaac 42987467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 29267792 - 29267854
Alignment:
Q  152 cacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    ||||| |||||||||||||||||||||||| || ||| ||  ||||||||||||||| |||||    
T  29267792 cacttgatcaagcatgtgagcacttaatgagtttatgagaatcgttagattaaaaccatatta 29267854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 37438003 - 37437961
Alignment:
Q  165 atgtgagcacttaatgaattgatgggagccgttagattaaaac 207  Q
    |||||||||  ||||||||||||||||||||||||||||||||    
T  37438003 atgtgagcatctaatgaattgatgggagccgttagattaaaac 37437961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 29266277 - 29266221
Alignment:
Q  158 atcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    ||||||||||| |  ||||||||| || ||||||||||||||||||||| |||||||    
T  29266277 atcaagcatgtaaatacttaatgagtttatgggagccgttagattaaaatcgtatta 29266221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 5331399 - 5331434
Alignment:
Q  9 taagttctttatgcaatgttgtgagtaattcatacc 44  Q
    |||||||||||||||||||| |||||||||||||||    
T  5331399 taagttctttatgcaatgttatgagtaattcatacc 5331434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 29267346 - 29267311
Alignment:
Q  9 taagttctttatgcaatgttgtgagtaattcatacc 44  Q
    |||||||||||||||||||| |||||||||||||||    
T  29267346 taagttctttatgcaatgttatgagtaattcatacc 29267311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 36732025 - 36732072
Alignment:
Q  158 atcaagcatgtgagcacttaatgaattgatgggagccgttagattaaa 205  Q
    |||||||||||||| | |||||||||||||| ||| ||||||||||||    
T  36732025 atcaagcatgtgagaatttaatgaattgatgagagacgttagattaaa 36732072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 5881247 - 5881201
Alignment:
Q  158 atcaagcatgtgagcacttaatgaattgatgggagccgttagattaa 204  Q
    |||||||||||||||| |||||||||||||| ||| |||| ||||||    
T  5881247 atcaagcatgtgagcatttaatgaattgatgagagacgttggattaa 5881201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 42986772 - 42986712
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaac 207  Q
    |||| ||||| ||||| |||| |||||||||||||||| ||| ||||| ||| ||||||||    
T  42986772 tgggtcacttgatcaaacatgcgagcacttaatgaattaatgagagccattaaattaaaac 42986712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 8513393 - 8513460
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8513393 tgggtcacttgatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaactgtatta 8513460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 8487297 - 8487237
Alignment:
Q  9 taagttctttatgcaa-tgttgtgagtaattcatacctaagaataaaagatgtagaatcct 68  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8487297 taagttctttatgcaaatgttgtgagtaattcatacctaagaataaaagatgtagaatcct 8487237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 8512971 - 8512911
Alignment:
Q  9 taagttctttatgcaa-tgttgtgagtaattcatacctaagaataaaagatgtagaatcct 68  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8512971 taagttctttatgcaaatgttgtgagtaattcatacctaagaataaaagatgtagaatcct 8512911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 8487738 - 8487805
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  8487738 tgggtcacttgatcaagcatgtgagcacttaatgaattgatgagagccgttagattaaaactgtatta 8487805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 38059973 - 38059906
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  38059973 tgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagattaaaaccgtatta 38059906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 8487155 - 8487088
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||    
T  8487155 tgggtcacttgatcaagcatgtgagcacttaatgaattgatgagagccgttagattaagcccgtatta 8487088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 8512830 - 8512763
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||    
T  8512830 tgggtcacttgatcaagcatgtgagcacttaatgaattgatgagagccgttagattaagcccgtatta 8512763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 28451245 - 28451183
Alignment:
Q  152 cacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    ||||| |||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  28451245 cacttgatcaagtatgtgagtacttaatgaattgatgagagccgttagattaaaaccgtatta 28451183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 31178766 - 31178699
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||| | ||||||| || |||||||||||||||||||||| ||||||    
T  31178766 tgggtcacttgatcaagcatgtgagtatttaatgagtttatgggagccgttagattaaaactgtatta 31178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 31179863 - 31179914
Alignment:
Q  161 aagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtat 212  Q
    ||||||| ||||||||||||| || |||||||||||||||||||||| ||||    
T  31179863 aagcatgcgagcacttaatgagtttatgggagccgttagattaaaactgtat 31179914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 25245596 - 25245658
Alignment:
Q  152 cacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    ||||| ||||| ||||||||||||||||||||| ||| ||| | |||||||||||| ||||||    
T  25245596 cacttgatcaaacatgtgagcacttaatgaattaatgagagtcattagattaaaacagtatta 25245658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 43742832 - 43742779
Alignment:
Q  161 aagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    ||||||||||||| ||||||| | ||||||| ||||||||||||||| ||||||    
T  43742832 aagcatgtgagcatttaatgagtcgatgggaaccgttagattaaaactgtatta 43742779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 21866324 - 21866380
Alignment:
Q  158 atcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    ||||| ||||||||||||||||||||||||| ||  | |||||||||||| ||||||    
T  21866324 atcaaacatgtgagcacttaatgaattgatgagaaacattagattaaaactgtatta 21866380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 3475017 - 3474970
Alignment:
Q  158 atcaagcatgtgagcacttaatgaattgatgggagccgttagattaaa 205  Q
    |||||||||||||||| |||||||||||||| ||| |||| |||||||    
T  3475017 atcaagcatgtgagcatttaatgaattgatgagagacgttggattaaa 3474970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 31179409 - 31179374
Alignment:
Q  9 taagttctttatgcaatgttgtgagtaattcatacc 44  Q
    |||||||||||||||||||| |||||||||||||||    
T  31179409 taagttctttatgcaatgttatgagtaattcatacc 31179374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 38060539 - 38060504
Alignment:
Q  9 taagttctttatgcaatgttgtgagtaattcatacc 44  Q
    |||||||||||||||||||| |||||||||||||||    
T  38060539 taagttctttatgcaatgttatgagtaattcatacc 38060504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 43334667 - 43334714
Alignment:
Q  158 atcaagcatgtgagcacttaatgaattgatgggagccgttagattaaa 205  Q
    |||||||||||||||| ||||||||||||||  || ||||||||||||    
T  43334667 atcaagcatgtgagcatttaatgaattgatgatagacgttagattaaa 43334714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 3163435 - 3163485
Alignment:
Q  155 ttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaa 205  Q
    ||||||||||||||||||| ||||||||||||||  || |||| |||||||    
T  3163435 ttaatcaagcatgtgagcatttaatgaattgatgatagacgttggattaaa 3163485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 21865692 - 21865632
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaac 207  Q
    |||| ||||| |||||  |||||||||||||||||||||||| || || || |||||||||    
T  21865692 tgggtcacttgatcaaaaatgtgagcacttaatgaattgatgtgaaccttttgattaaaac 21865632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 21146062 - 21145995
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  21146062 tgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagattaaaaccgtatta 21145995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 21148027 - 21148094
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| ||||||||||||| |||||||||| || |||||||||||||||||||||||||||||    
T  21148027 tgggtcacttgatcaagcatgtgaacacttaatgagtttatgggagccgttagattaaaaccgtatta 21148094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 23206124 - 23206191
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||||||||||||| || ||| |||||||||||||||||||||||||    
T  23206124 tgggtcacttgatcaagcatgtgagcacttaatgagtttatgagagccgttagattaaaaccgtatta 23206191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 42521621 - 42521688
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||||||||||||| || ||| |||||||||||||||||||||||||    
T  42521621 tgggtcacttgatcaagcatgtgagcacttaatgagtttatgagagccgttagattaaaaccgtatta 42521688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 42520743 - 42520676
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||| ||||| |||||||||||||||||||||||| || ||| ||| |||||||||||||||||||||    
T  42520743 tgggtcacttgatcaagcatgtgagcacttaatgagtttatgagagtcgttagattaaaaccgtatta 42520676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 21146441 - 21146476
Alignment:
Q  9 taagttctttatgcaatgttgtgagtaattcatacc 44  Q
    |||||||||||||||||||| |||||||||||||||    
T  21146441 taagttctttatgcaatgttatgagtaattcatacc 21146476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 42520372 - 42520418
Alignment:
Q  158 atcaagcatgtgagcacttaatgaattgatgggagccgttagattaa 204  Q
    |||||||||||||||| |||||||||||||| ||| |||| ||||||    
T  42520372 atcaagcatgtgagcatttaatgaattgatgagagacgttggattaa 42520418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 31219930 - 31219986
Alignment:
Q  158 atcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    ||||||| | ||||||| | |||||||||||| |||||||| |||||||| ||||||    
T  31219930 atcaagcttatgagcacatgatgaattgatggaagccgttacattaaaactgtatta 31219986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 105631 - 105569
Alignment:
Q  152 cacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    ||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  105631 cacttgatcaagcatgtgaacacataatgaattgatgggagccgttagattaaaaccgtatta 105569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 106080 - 106140
Alignment:
Q  9 taagttctttatgcaa-tgttgtgagtaattcatacctaagaataaaagatgtagaatcct 68  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  106080 taagttctttattcaaatgttgtgagtaattcatacctaagaataaaagatgtagaatcct 106140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 106224 - 106286
Alignment:
Q  152 cacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||    
T  106224 cacttgatcaagcatgtgagcacttaatgaattgatgggcgccgttagattaagcccgtatta 106286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 2254 - 2317
Alignment:
Q  147 tgggccacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgt 210  Q
    |||| ||||| |||||||||||||||||||||||| || |||| ||||||||||||||||||||    
T  2254 tgggtcacttgatcaagcatgtgagcacttaatgagtttatggaagccgttagattaaaaccgt 2317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 722 - 674
Alignment:
Q  166 tgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||    
T  722 tgtgagcacttaatgagtttatgggagccgttagattaaaaccgtatta 674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 25735 - 25673
Alignment:
Q  152 cacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgtatta 214  Q
    ||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||    
T  25735 cacttgatcaagcatgtgaacacttaatgaattgatgagagacgttagattaaaactgtatta 25673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 18154410 - 18154451
Alignment:
Q  164 catgtgagcacttaatgaattgatgggagccgttagattaaa 205  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  18154410 catgtgagcacttaatgaattgatggaaaccgttagattaaa 18154451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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