View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-17-LTR4-TNT-insertion-8 (Length: 651)
Name: Tnk88-17-LTR4-TNT-insertion-8
Description: Tnk88-17-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-17-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr2 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 9 - 641
Target Start/End: Original strand, 1350516 - 1351148
Alignment:
| Q |
9 |
gttatctgacaaatggacatttagacaccatcatagactggatccctggcatgaagaacattactttaagaaaccttccaggcatatatcacacaacaga |
108 |
Q |
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| T |
1350516 |
gttatctgacaaatggacatttagacaccatcatagactggatccctggcatgaagaacattactttaagaaaccttccaggcatatatcacacaacaga |
1350615 |
T |
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| Q |
109 |
tccaaatgatacacttttggactttgttatagaacaaatagaagcagcttcaaaagcttctgctattattctaccaacttttgatgccctggagtatgat |
208 |
Q |
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| T |
1350616 |
tccaaatgatacacttttggactttgttacagaacaaatagaagcagcttcaaaagcttctgctattattctaccaacttttgatgccctggagtatgat |
1350715 |
T |
|
| Q |
209 |
gtattgaatgagctctccacaatgtttcctaaactctacacattaggcccacttgatttgttccttgataaaatttcagaaaataatggatttgaatcta |
308 |
Q |
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| T |
1350716 |
gtattgaatgagctctccacaatgtttcctaaactctacacattaggcccacttgatttgttccttgataaaatttcagaaaataatggatttgaatcta |
1350815 |
T |
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| Q |
309 |
ttcaatgcaatttgtggaaagaagagagtgagtgtctcaaatggctagattcacaggaagaaaattctgttctctatgtgaattttggaagtgttatagt |
408 |
Q |
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| T |
1350816 |
ttcaatgcaatttgtggaaagaagagagtgagtgtctcaaatggctagattcacaggaagaaaattctgttctctatgtgaattttggaagtgttatagt |
1350915 |
T |
|
| Q |
409 |
catgaagtataaccagctagttgaattggcatggggattagcaaatagtaagaaaaagttcttgtgggtgattaggcctgatttagttaagggtgaaagt |
508 |
Q |
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| T |
1350916 |
catgaagtataaccagctagttgaattggcatggggattagcaaatagcaagaaaaagttcttgtgggtgattaggcctgatttagttaagggtgaaagt |
1351015 |
T |
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| Q |
509 |
gaaacattgcttgtgccacaagaaattgtggaagaaaccaaagatagaggactaatggtaggttggtgtccacaagagaaagttctaaagcacaaagcag |
608 |
Q |
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| T |
1351016 |
gaaacattgcttgtgccacaagaaattgtggaagaaaccaaagatagaggactaatggtaggttggtgtccacaagagaaagttctaaagcacaaagcag |
1351115 |
T |
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| Q |
609 |
tgggagggtttttgagtcactgtggttggaatt |
641 |
Q |
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| T |
1351116 |
tgggagggtttttgagtcactgtggttggaatt |
1351148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 550 - 591
Target Start/End: Complemental strand, 4560896 - 4560855
Alignment:
| Q |
550 |
agatagaggactaatggtaggttggtgtccacaagagaaagt |
591 |
Q |
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| T |
4560896 |
agatagaggactaatagcaagttggtgtccacaagagaaagt |
4560855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 550 - 591
Target Start/End: Complemental strand, 4574698 - 4574657
Alignment:
| Q |
550 |
agatagaggactaatggtaggttggtgtccacaagagaaagt |
591 |
Q |
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| T |
4574698 |
agatagaggactaatagcaagttggtgtccacaagagaaagt |
4574657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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