View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-20-LTR4-TNT-insertion-1 (Length: 415)
Name: Tnk88-20-LTR4-TNT-insertion-1
Description: Tnk88-20-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-20-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 29840388 - 29840145
Alignment:
| Q |
8 |
atatgtgtatactttatactatacgacagataatagcatagcagtgtgtaaaggggaagataatagataaccttgacaatggaggagcagtgttgaatgc |
107 |
Q |
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| T |
29840388 |
atatgtgtatactttatactatacgacagataatagcatagcagtgtgtaaaggggaagataatagataaccttgacaatggaggagcagtgttgaatgc |
29840289 |
T |
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| Q |
108 |
ctcacacaacttcttgctttctttgaaatattcatctgctgcttgcaaagcagctacagccatcccatgagatttctctgtatttccctcatcaagaatc |
207 |
Q |
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| T |
29840288 |
ctcacacaactttttgctttctttgaaatattcatctgctgcttgcaaagcagctacagccatcccatgagatttctctgtatttccctcatcaagaatc |
29840189 |
T |
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| Q |
208 |
aaaccacgataataatatgccacagcctggtataaatcgtttttaa |
253 |
Q |
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| T |
29840188 |
aaaccatgataataatatgccacagcctgg--taaatcgtttttaa |
29840145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 65 - 287
Target Start/End: Original strand, 29831353 - 29831574
Alignment:
| Q |
65 |
agataatagataaccttgacaatggaggagcagtgttgaatgcctcacacaacttcttgctttctttgaaatattcatctgctgcttgcaaagcagctac |
164 |
Q |
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| T |
29831353 |
agataatagataaccttgacaatggaggagcagtgttgaatgcctcacacaactttttgctttctttgaaatattcatctgctgcttgcaaagcagctac |
29831452 |
T |
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| Q |
165 |
agccatcccatgagatttctctgtatttccctcatcaagaatcaaaccacgataataatatgccacagcctggtataaatcgttttt-aagtagttcttt |
263 |
Q |
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| T |
29831453 |
agccatcccatgagatttctctgtatttccctcatcaagaatcaaaccatgataataatatgccacagcctgg--taaatcgtttttaaagtagttcttt |
29831550 |
T |
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| Q |
264 |
cttctaagaatacaagatttaaga |
287 |
Q |
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| T |
29831551 |
cttctaagaatacaagatttaaga |
29831574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 307 - 406
Target Start/End: Original strand, 29819085 - 29819184
Alignment:
| Q |
307 |
aagtagtttagaggctataattccactctttaagatgaataaatggataaatttatgtttgaacatcaatccctatatattgtaatgtctatatcaattg |
406 |
Q |
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| T |
29819085 |
aagtagtttagaggctataatttcactctttaagacgaataaatggataactttatgtttgaacatcaatccctacatattgtaatgtctatatcaattg |
29819184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 310 - 387
Target Start/End: Original strand, 29831645 - 29831722
Alignment:
| Q |
310 |
tagtttagaggctataattccactctttaagatgaataaatggataaatttatgtttgaacatcaatccctatatatt |
387 |
Q |
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| T |
29831645 |
tagtttagaggctataattccactctttaagatgaataaatggataaatttatgtttgaacatcaatccctacatatt |
29831722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 341 - 387
Target Start/End: Original strand, 28473142 - 28473188
Alignment:
| Q |
341 |
atgaataaatggataaatttatgtttgaacatcaatccctatatatt |
387 |
Q |
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| T |
28473142 |
atgaataaatggataaatttatgtttgaacatcaatccctacatatt |
28473188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 42 - 228
Target Start/End: Original strand, 34624813 - 34624998
Alignment:
| Q |
42 |
agcatagcagtgtgtaaaggggaagataatagataaccttgacaatggaggagcagtgttgaatgcctcacacaacttcttgctttctttgaaatattca |
141 |
Q |
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| T |
34624813 |
agcataacagtgagtacaggggaatgtaat-gatgaccttgacaatggagttgctgcattgaatgcctcacagagcttcttactttctttgaaatactca |
34624911 |
T |
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| Q |
142 |
tctgctgcttgcaaagcagctacagccatcccatgagatttctctgtatttccctcatcaagaatcaaaccacgataataatatgcc |
228 |
Q |
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| T |
34624912 |
tccgctgcttgcagcgcagctacagccatcccatgagatttctctgtattgccctcatcaagaatcaaaccatgataataatatgcc |
34624998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 307 - 406
Target Start/End: Original strand, 5720623 - 5720722
Alignment:
| Q |
307 |
aagtagtttagaggctataattccactctttaagatgaataaatggataaatttatgtttgaacatcaatccctatatattgtaatgtctatatcaattg |
406 |
Q |
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| T |
5720623 |
aagtagtttagaggctataatttcactctttaagacgaataaatggataactttatgtttgaacatcaatccctacatattgtaatgtctatatcaattg |
5720722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 5306465 - 5306529
Alignment:
| Q |
146 |
ctgcttgcaaagcagctacagccatcccatgagatttctctgtatttccctcatcaagaatcaaa |
210 |
Q |
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| T |
5306465 |
ctgcttgtagagcagctacaaccatcccatgagatttttatttatttccgtcttcaagaatcaaa |
5306529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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