View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-20-LTR4-TNT-insertion-3 (Length: 237)
Name: Tnk88-20-LTR4-TNT-insertion-3
Description: Tnk88-20-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-20-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 52568628 - 52568473
Alignment:
| Q |
74 |
tatttttagaatcaaagacctgacagtaaccaacagagggattatgtcgagcatatgcagtaagtaatcgtctcaaagcatttctaccatcctcgtccaa |
173 |
Q |
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| T |
52568628 |
tatttttagaatcaaagacctgacagtaaccaacagagggattatgtcgagcatatgcagtaagtaatcgtctcaaagcatttctaccatcctcgtccaa |
52568529 |
T |
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| Q |
174 |
agcagggtgaccaggaaatgtccgcggcagatcctgcacaaacaatcaacaattgg |
229 |
Q |
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| T |
52568528 |
agcagggtgaccaggaaatgtccgcggcagatcctgcacaaacaatcaacaattgg |
52568473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 185
Target Start/End: Original strand, 28904860 - 28904954
Alignment:
| Q |
91 |
acctgacagtaaccaacagagggattatgtcgagcatatgc-agtaagtaatcgtctcaaagcatttctaccatcctcgtccaaagcagggtgacc |
185 |
Q |
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| T |
28904860 |
acctgacagtacccaacagaggggttatgtcgagcatatgctagt-agtaaacgcctcaaggaatttctgccgttttcgtccaaagcagggtgacc |
28904954 |
T |
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