View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-26-LTR4-TNT-insertion-1 (Length: 296)
Name: Tnk88-26-LTR4-TNT-insertion-1
Description: Tnk88-26-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-26-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 13095367 - 13095642
Alignment:
| Q |
10 |
ttccatacatcgtgtggaatcataagtgaaaatactacctccaaaaacttcaaaagtatcatggaacattgaccctttcgcgtagttgccagaattcttc |
109 |
Q |
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| T |
13095367 |
ttccatacatcgtc-ggaatcagaattgaaaatactacctccaagaacttcaaaaatatcatggaattttgaccctttcgcgtagttgccaacattcttc |
13095465 |
T |
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| Q |
110 |
tttgtgatgtagtccacgttcattggatcagctagaccgataaagtttatgtttgtgaaccagggccctataattcgaaaagttcctccatgacgcttca |
209 |
Q |
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| T |
13095466 |
tttgtgatgtagtccacgttcattggatcagctagaccgataaagcttatgtcagtgaaccagggccctttaattagaaaagttcctccatggcgcttca |
13095565 |
T |
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| Q |
210 |
aaacaatggttgcataatcatggaaatcagagagatgacgcaaaaatgtcggtagcataccaattattggccaatta |
286 |
Q |
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| T |
13095566 |
aaacaatggttgcataatcatggaaatcggagagatgatgcaaaaatgccggtagcataccaattattggccaatta |
13095642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 13162489 - 13162764
Alignment:
| Q |
10 |
ttccatacatcgtgtggaatcataagtgaaaatactacctccaaaaacttcaaaagtatcatggaacattgaccctttcgcgtagttgccagaattcttc |
109 |
Q |
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| T |
13162489 |
ttccatacatcgt-tggaatcagaattgaaaatactacctccaagaacttcaaaaatatcatggaattttgaccctttcgcgtagttgccaaaattcttc |
13162587 |
T |
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| Q |
110 |
tttgtgatgtagtccacgttcattggatcagctagaccgataaagtttatgtttgtgaaccagggccctataattcgaaaagttcctccatgacgcttca |
209 |
Q |
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| T |
13162588 |
tttgtgatgtatgtcacgttcattggatcagctagaccgacaaagcttgtgtttgtgaaccagggtccttgaaatcgataagttcctccattacgcttca |
13162687 |
T |
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| Q |
210 |
aaacaatggttgcataatcatggaaatcagagagatgacgcaaaaatgtcggtagcataccaattattggccaatta |
286 |
Q |
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| T |
13162688 |
aaacaatggttgcataatcatggaaatcggagagatgatgcaaaaatgttggtagcataccaattattggccaatta |
13162764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 13130796 - 13131071
Alignment:
| Q |
10 |
ttccatacatcgtgtggaatcataagtgaaaatactacctccaaaaacttcaaaagtatcatggaacattgaccctttcgcgtagttgccagaattcttc |
109 |
Q |
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| T |
13130796 |
ttccatacatcgtc-ggaatcagaattgaaaatactacctccaagaacttcaaaaatgtcatgatattttgaccctttcctgtagttgccacaattcttc |
13130894 |
T |
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| Q |
110 |
tttgtgatgtagtccacgttcattggatcagctagaccgataaagtttatgtttgtgaaccagggccctataattcgaaaagttcctccatgacgcttca |
209 |
Q |
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| T |
13130895 |
tttgtgatgtagttcacgttcatttgatcagctagagcgataaagcttgtgtttgtgaaccagggcccttgaaatcgacaagttcctccataacgcttca |
13130994 |
T |
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| Q |
210 |
aaacaatggttgcataatcatggaaatcagagagatgacgcaaaaatgtcggtagcataccaattattggccaatta |
286 |
Q |
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| T |
13130995 |
aaacaatggttgaataatcatggtaatcggagagatgacacaaaaatgacggtagtataccaattattggccaatta |
13131071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 280
Target Start/End: Original strand, 13005878 - 13006056
Alignment:
| Q |
102 |
aattcttctttgtgatgtagtccacgttcattggatcagctagac-cgataaagtttatgtttgtgaaccagggccctataattcgaaaagttcctccat |
200 |
Q |
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||||||| ||||||||| ||| |||||||||||||||| | | | |||||||| || | |||||| | ||||||||| | ||||||||||||||||| |
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| T |
13005878 |
aattcttgcttgtgatgtggtcaacgttcattggatcag-tggtcgcgataaagcttgtatttgtgtatcagggcccttcgaatcgaaaagttcctccat |
13005976 |
T |
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| Q |
201 |
gacgcttcaaaacaatggttgcataatcatggaaatcagagagatgacgcaaaaatgtcggtagcataccaattattggc |
280 |
Q |
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| T |
13005977 |
gatgctttaaaacaaaggttgcataatcatgtaaattggatagatgactcaaaaacctcggtagcataccatttactggc |
13006056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 145 - 285
Target Start/End: Original strand, 13214575 - 13214715
Alignment:
| Q |
145 |
accgataaagtttatgtttgtgaaccagggccctataattcgaaaagttcctccatgacgcttcaaaacaatggttgcataatcatggaaatcagagaga |
244 |
Q |
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| T |
13214575 |
accgataaagcttgtgtttgtgaaccaggctcactcaaatcgaaacattcctccatgatgtttcaaaactaaggttgtataatcatggaaattggacagg |
13214674 |
T |
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| Q |
245 |
tgacgcaaaaatgtcggtagcataccaattattggccaatt |
285 |
Q |
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| T |
13214675 |
ggacgcaaaatcgtcggtagcataccaattattggccaatt |
13214715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 285
Target Start/End: Original strand, 13102101 - 13102227
Alignment:
| Q |
159 |
tgtttgtgaaccagggccctataattcgaaaagttcctccatgacgcttcaaaacaatggttgcataatcatggaaatcagagagatgacgcaaaaatgt |
258 |
Q |
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| T |
13102101 |
tgtttgtgaaccaggctccttcaaatcgaaacgttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacaggtgacgcaaaagcgc |
13102200 |
T |
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| Q |
259 |
cggtagcataccaattattggccaatt |
285 |
Q |
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| T |
13102201 |
tggtagcataccaattattggccaatt |
13102227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 213
Target Start/End: Complemental strand, 30367318 - 30367127
Alignment:
| Q |
25 |
ggaatcataagtgaaaatactacctccaaaaacttcaaaagtatcatggaac--att-gaccctttcgcgtagttgccagaattcttctttgtgatgtag |
121 |
Q |
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| T |
30367318 |
ggaatcagaattgacaataccacctccaaaaaattcaaaaatttcttggaagttattagaccccctcccgtagttgccaaaattcttgcttgcgatgtgg |
30367219 |
T |
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| Q |
122 |
tccacgttcattggatcagctagaccgataaagtttatgtttgtgaaccagggccctataattcgaaaagttcctccatgacgcttcaaaac |
213 |
Q |
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| T |
30367218 |
ttaacgttcattggatcagcagtagcgataaagcttgtgtttgtgaatcagggtccttcaaatcgaaacgttcctccatgacatttcaaaac |
30367127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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