View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-26-LTR4-TNT-insertion-10 (Length: 123)
Name: Tnk88-26-LTR4-TNT-insertion-10
Description: Tnk88-26-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-26-LTR4-TNT-insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 55; Significance: 5e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 51327298 - 51327356
Alignment:
| Q |
55 |
caatttgatctataaggtccaaaagaatgaaataaattttatgagggctaatttgaatt |
113 |
Q |
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| T |
51327298 |
caatttgatctgtaaggtccaaaagaatgaaataaattttatgagggctaatttgaatt |
51327356 |
T |
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