View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk88-26-LTR4-TNT-insertion-11 (Length: 170)

Name: Tnk88-26-LTR4-TNT-insertion-11
Description: Tnk88-26-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk88-26-LTR4-TNT-insertion-11
Tnk88-26-LTR4-TNT-insertion-11
[»] chr3 (9 HSPs)
chr3 (9-162)||(10372401-10372554)
chr3 (9-90)||(10130452-10130533)
chr3 (24-158)||(10264339-10264473)
chr3 (9-90)||(10584409-10584490)
chr3 (9-70)||(9980923-9980984)
chr3 (9-70)||(10035547-10035608)
chr3 (19-87)||(10360279-10360347)
chr3 (26-65)||(10430328-10430367)
chr3 (26-77)||(10504580-10504631)
[»] scaffold0083 (1 HSPs)
scaffold0083 (9-70)||(54153-54214)
[»] chr2 (1 HSPs)
chr2 (24-144)||(26910477-26910597)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 1e-67; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 10372401 - 10372554
Alignment:
Q  9 tccacatagctaggcctttgatctcctgaaaagatgaaataaacattttcctttgattagctccgaagatatgattgttaaannnnnnnngttgtagaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||    
T  10372401 tccacatagctaggcctttgatctcctgaaaagatgaaataaacattttcctttgattagctccgaagatatgattgttaaattttttttgttgtagaaa 10372500  T
Q  109 atgttctttagacaattccatttggactacagtttaaaaaacataatgagatta 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10372501 atgttctttagacaattccatttggactacagtttaaaaaacataatgagatta 10372554  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 10130533 - 10130452
Alignment:
Q  9 tccacatagctaggcctttgatctcctgaaaagatgaaataaacattttcctttgattagctccgaagatatgattgttaaa 90  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10130533 tccacatagctgggcctttgatctcctgaaaagatgaaataagcattttcctttgattagctccgaagatatgattgttaaa 10130452  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 10264473 - 10264339
Alignment:
Q  24 ctttgatctcctgaaaagatgaaataaacattttcctttgattagctccgaagatatgattgttaaannnnnnnngttgtagaaaatgttctttagacaa 123  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||| | || ||||||||||||        ||||||||||||||||||| |||||    
T  10264473 ctttgatcttctgaaaagatgaaataagcattttcctttgattagctccaaggacatgattgttaaatttttattgttgtagaaaatgttctttcgacaa 10264374  T
Q  124 ttccatttggactacagtttaaaaaacataatgag 158  Q
    |||||||| || ||| ||||| |||||||| ||||    
T  10264373 ttccatttagattactgtttacaaaacatattgag 10264339  T

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Target: chr3; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 10584490 - 10584409
Alignment:
Q  9 tccacatagctaggcctttgatctcctgaaaagatgaaataaacattttcctttgattagctccgaagatatgattgttaaa 90  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||    
T  10584490 tccacatagctaggcctttgatctcctgaaaagttgaaataagcattttcctttgattagctccaaagacatgattgttaaa 10584409  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 9980984 - 9980923
Alignment:
Q  9 tccacatagctaggcctttgatctcctgaaaagatgaaataaacattttcctttgattagct 70  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9980984 tccacatagctaggcctttgatctcctgaaaagatgaaataagcattttcctttgattagct 9980923  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 10035608 - 10035547
Alignment:
Q  9 tccacatagctaggcctttgatctcctgaaaagatgaaataaacattttcctttgattagct 70  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10035608 tccacatagctaggcctttgatctcctgaaaagatgaaataagcattttcctttgattagct 10035547  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 10360279 - 10360347
Alignment:
Q  19 taggcctttgatctcctgaaaagatgaaataaacattttcctttgattagctccgaagatatgattgtt 87  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| |||||||||    
T  10360279 taggcctttgatctcctgaaaagttgaaataagcattttcctttgattagctccaaagacatgattgtt 10360347  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 10430328 - 10430367
Alignment:
Q  26 ttgatctcctgaaaagatgaaataaacattttcctttgat 65  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  10430328 ttgatctcctgaaaagatcaaataagcattttcctttgat 10430367  T

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Target: chr3; HSP #9
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 10504631 - 10504580
Alignment:
Q  26 ttgatctcctgaaaagatgaaataaacattttcctttgattagctccgaaga 77  Q
    ||||||||||| |||||| |||||| |||||| |||| |||||||| |||||    
T  10504631 ttgatctcctgtaaagatcaaataagcatttttctttcattagctctgaaga 10504580  T

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Target: scaffold0083 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 54153 - 54214
Alignment:
Q  9 tccacatagctaggcctttgatctcctgaaaagatgaaataaacattttcctttgattagct 70  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54153 tccacatagctaggcctttgatctcctgaaaagatgaaataagcattttcctttgattagct 54214  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 26910597 - 26910477
Alignment:
Q  24 ctttgatctcctgaaaagatgaaataaacattttcctttgattagctccgaagatatgattgttaaannnnnnnngttgtagaaaatgttctttagacaa 123  Q
    |||||||||||||||||||| |||||| |||||| |||| ||||||||| |||| |||||||| |||        ||||||||||| |||||||||||||    
T  26910597 ctttgatctcctgaaaagatcaaataagcatttttctttaattagctccaaagacatgattgtcaaatttttattgttgtagaaaaagttctttagacaa 26910498  T
Q  124 ttccatttggactacagttta 144  Q
    |||||||| || | |||||||    
T  26910497 ttccatttagatttcagttta 26910477  T

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