View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-26-LTR4-TNT-insertion-12 (Length: 453)
Name: Tnk88-26-LTR4-TNT-insertion-12
Description: Tnk88-26-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-26-LTR4-TNT-insertion-12 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 75 - 444
Target Start/End: Complemental strand, 46139091 - 46138731
Alignment:
| Q |
75 |
gaattctctgatctccatttcttttgactcatttcatatttacatagtgcttggttttttagatattttatatagcagtactcttacaagtgacatatat |
174 |
Q |
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| T |
46139091 |
gaattctctaaactccatttcttttgactcatttcatatttacatagtgcttggttttttagatattttatatagcagtactcttacaagtgacatatat |
46138992 |
T |
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| Q |
175 |
gactaaatcaaaattagttcgttattttgcttaattttcatcccttaaattaagtcacctgatttcttcaaaataagtttacatatgagcaaagagatgt |
274 |
Q |
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| T |
46138991 |
cactaaatcaaaattagttcgttattttgcttaattttcatcccttaaa--aagttacctgatttcttcaaaataagtttacatatgagcaaagagatgt |
46138894 |
T |
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| Q |
275 |
atcatacatgctgcatgcaatcagtaaagatgattgtttttctatactgttacgacaaaactttcatatgtaaactctagtattgaatgtggcattgaat |
374 |
Q |
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| T |
46138893 |
atcata-------catgcaatcagtaaagaggattgtttttctatactgttacgacaaaactttcatatgtaaactctagtattgaatgtggcattgaat |
46138801 |
T |
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| Q |
375 |
ggcataatatctatattactcgtaaggagaacaacacacccaaagttcagaattgtagttcctgcaattg |
444 |
Q |
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| T |
46138800 |
ggcataatatctatatcactcggaaggagaacaacacacccaaagttcagaattgtagttcctgcaattg |
46138731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 52955200 - 52955270
Alignment:
| Q |
11 |
caatatagtccaagtgaaaactaaagcatcgtcccaaaaacagcaaaaaccatcgcatggaagggaattct |
81 |
Q |
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| T |
52955200 |
caatatagtccaagtgaaaactaaagcatcgtcccaaaaacagcaaaaaccatcgcatggaagggaattct |
52955270 |
T |
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