View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk88-26-LTR4-TNT-insertion-13 (Length: 409)

Name: Tnk88-26-LTR4-TNT-insertion-13
Description: Tnk88-26-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk88-26-LTR4-TNT-insertion-13
Tnk88-26-LTR4-TNT-insertion-13
[»] chr4 (7 HSPs)
chr4 (8-309)||(11118725-11119026)
chr4 (304-400)||(22724586-22724682)
chr4 (304-389)||(36038864-36038949)
chr4 (304-400)||(41403842-41403939)
chr4 (304-376)||(15535175-15535247)
chr4 (304-376)||(49546871-49546943)
chr4 (304-372)||(14486719-14486787)
[»] chr8 (3 HSPs)
chr8 (304-400)||(364919-365015)
chr8 (304-376)||(8727658-8727729)
chr8 (309-372)||(29643308-29643371)
[»] chr3 (10 HSPs)
chr3 (304-400)||(12306116-12306212)
chr3 (304-400)||(29543936-29544032)
chr3 (304-400)||(46722489-46722585)
chr3 (304-376)||(38310724-38310796)
chr3 (304-376)||(54521816-54521888)
chr3 (304-399)||(8372994-8373090)
chr3 (304-376)||(16801087-16801159)
chr3 (304-376)||(20247713-20247785)
chr3 (304-372)||(24193016-24193084)
chr3 (8-84)||(8523841-8523917)
[»] chr2 (6 HSPs)
chr2 (304-400)||(13100634-13100733)
chr2 (304-400)||(45029400-45029497)
chr2 (304-376)||(10683859-10683931)
chr2 (304-376)||(20262213-20262285)
chr2 (12-100)||(12249269-12249357)
chr2 (120-211)||(32681369-32681460)
[»] chr5 (14 HSPs)
chr5 (304-400)||(24593967-24594063)
chr5 (304-400)||(24668061-24668157)
chr5 (304-400)||(24736656-24736752)
chr5 (304-400)||(24737830-24737926)
chr5 (304-400)||(24750599-24750695)
chr5 (304-376)||(9777159-9777231)
chr5 (49-215)||(42124180-42124346)
chr5 (17-85)||(34239782-34239850)
chr5 (8-74)||(41712767-41712833)
chr5 (11-88)||(41571229-41571306)
chr5 (45-85)||(34232058-34232098)
chr5 (49-96)||(41445148-41445195)
chr5 (12-71)||(42129699-42129758)
chr5 (49-93)||(41432340-41432384)
[»] chr7 (6 HSPs)
chr7 (304-376)||(23664049-23664121)
chr7 (304-376)||(29797605-29797677)
chr7 (304-376)||(29801424-29801496)
chr7 (304-349)||(10895742-10895787)
chr7 (304-349)||(16009635-16009680)
chr7 (342-376)||(11304281-11304315)
[»] chr6 (6 HSPs)
chr6 (304-376)||(2286691-2286763)
chr6 (304-376)||(29483355-29483427)
chr6 (8-167)||(25522238-25522397)
chr6 (304-348)||(25598703-25598747)
chr6 (304-349)||(4477916-4477961)
chr6 (270-309)||(25522500-25522539)
[»] scaffold0025 (1 HSPs)
scaffold0025 (304-372)||(14323-14391)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 11119026 - 11118725
Alignment:
Q  8 ccagaatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctccaaatttgatg 107  Q
    ||||||| |||||||| ||| ||||| ||| ||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  11119026 ccagaatgcattttcagcctaacaaagctagatgaactagatctatcatcaaacaacttgagtggtgttgtcaattttaaactcttctccaaatttgctg 11118927  T
Q  108 aactggaaattttatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatgacacttatagttttactaacctacaaatactgaaattatc 207  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  11118926 acctggaaattttatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatgtcacttatagttttactaacctacaaatactcaaattatc 11118827  T
Q  208 ttctgtcatattgattgagtttcacaacttacaaggagatttcccacgtttgcaacatctgcatctttccaataacaaacttagtggaagaatgcccaat 307  Q
    ||||||||  ||||| || |||||||||||||||||||| || ||| |||||  ||||||| |||||||||| |||||||||| ||||||||||||||||    
T  11118826 ttctgtcaacttgatcgaatttcacaacttacaaggagaatttccaagtttgtcacatctggatctttccaaaaacaaacttaatggaagaatgcccaat 11118727  T
Q  308 tg 309  Q
    ||    
T  11118726 tg 11118725  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 304 - 400
Target Start/End: Complemental strand, 22724682 - 22724586
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctctgttttcctcccaaagtttcaattg 400  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  22724682 caattgcacaaacaaatctacagcaaaatcgatcccctcttgctcttgttctccccttggcttggttttctctgttttcctcccaaagattcaattg 22724586  T

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Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 304 - 389
Target Start/End: Original strand, 36038864 - 36038949
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctctgttttcctcccaa 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36038864 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctccccttggcttggttttctctgttttcctcccaa 36038949  T

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Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 304 - 400
Target Start/End: Complemental strand, 41403939 - 41403842
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaa-tcgatcccctcttgctcttgttctgcccttggcttggttttctctgttttcctcccaaagtttcaattg 400  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||    
T  41403939 caattgcacaaacaaagctacagcaaaaatcgatcccctcttgctcttgttctccccttggcttggttttctctgttttcttcccaaaggttcaattg 41403842  T

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Target: chr4; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 15535175 - 15535247
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctct 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15535175 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctccccttggcttggttttctct 15535247  T

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Target: chr4; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 49546943 - 49546871
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctct 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  49546943 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctccccttggcttggttttctct 49546871  T

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Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 304 - 372
Target Start/End: Original strand, 14486719 - 14486787
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggtttt 372  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  14486719 caattgcacaaacaaagctacagcaaaatcgatcccttcttgctcttgctctccccttggcttggtttt 14486787  T

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Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 304 - 400
Target Start/End: Original strand, 364919 - 365015
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctctgttttcctcccaaagtttcaattg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  364919 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctccccttggcttggttttctctgttttcctcccaaagtttcaattg 365015  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 8727729 - 8727658
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctct 376  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  8727729 caattgcacaa-caaagctacagcaaaatcgatcccctcttgctcttgttctccccttggctttgttttctct 8727658  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 372
Target Start/End: Complemental strand, 29643371 - 29643308
Alignment:
Q  309 gcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggtttt 372  Q
    |||| ||||||||||||  |||||||||||||||||||||||| ||| |||||||||| |||||    
T  29643371 gcacgaacaaagctacaataaaatcgatcccctcttgctcttgctctccccttggctttgtttt 29643308  T

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Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 304 - 400
Target Start/End: Original strand, 12306116 - 12306212
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctctgttttcctcccaaagtttcaattg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  12306116 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctccccttggcttggttttctctgttttcctcccagagtttcaattg 12306212  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 304 - 400
Target Start/End: Complemental strand, 29544032 - 29543936
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctctgttttcctcccaaagtttcaattg 400  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  29544032 caattgcacaaacaaaactacagcaaaatcgatcccctcttgctcttgttctctccttggcttggttttctctgttttcctcccaaagtttcaattg 29543936  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 304 - 400
Target Start/End: Complemental strand, 46722585 - 46722489
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctctgttttcctcccaaagtttcaattg 400  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||  ||||||||    
T  46722585 caattgcacaaacaaagctacagcaaaatcgttcccctcttgctcttgttctacctttggcttggttttctctgttttcctcccaaaagttcaattg 46722489  T

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Target: chr3; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 38310796 - 38310724
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctct 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38310796 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctccccttggcttggttttctct 38310724  T

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Target: chr3; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 54521816 - 54521888
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctct 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  54521816 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctccccttggcttggttttctct 54521888  T

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Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 304 - 399
Target Start/End: Complemental strand, 8373090 - 8372994
Alignment:
Q  304 caattgcacaa-acaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctctgttttcctcccaaagtttcaatt 399  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| || ||||||| ||||| |||||||    
T  8373090 caattgcacaacacaaagctacagcaaaattgatcccctcttgctcttgttctccccttggcttggttttctttgctttcctctcaaaggttcaatt 8372994  T

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Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 16801087 - 16801159
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctct 376  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16801087 caattgcacaaacaaagctacaacaaaatcgatcccctcttgctcttgttctccccttggcttggttttctct 16801159  T

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Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 20247785 - 20247713
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctct 376  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20247785 caattgcacaaacgaagctacagcaaaatcgatcccctcttgctcttgttctccccttggcttggttttctct 20247713  T

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Target: chr3; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 304 - 372
Target Start/End: Original strand, 24193016 - 24193084
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggtttt 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24193016 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctccccttggcttggtttt 24193084  T

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Target: chr3; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 8523917 - 8523841
Alignment:
Q  8 ccagaatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtgctgtcaattt 84  Q
    ||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||| |||||||||    
T  8523917 ccagaatccattttcaaccttgcaaacctaagtagactagatctatcatcaaacaacttgagtggtgttgtcaattt 8523841  T

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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 304 - 400
Target Start/End: Complemental strand, 13100733 - 13100634
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttct---gcccttggcttggttttctctgttttcctcccaaagtttcaattg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| |||||||||||||||||||||||||    
T  13100733 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctcccccccttggcttggttttctttgttttcctcccaaagtttcaattg 13100634  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 304 - 400
Target Start/End: Original strand, 45029400 - 45029497
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaa-tcgatcccctcttgctcttgttctgcccttggcttggttttctctgttttcctcccaaagtttcaattg 400  Q
    |||||||||||| ||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||    
T  45029400 caattgcacaaataaagctacagcaaaaatcgaccccctcttgctcttgttctcctcttggcttggttttctctgttttcctcccaaaggttcaattg 45029497  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 10683931 - 10683859
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctct 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10683931 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctccccttggcttggttttctct 10683859  T

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Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 20262213 - 20262285
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctct 376  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20262213 caattgcacaaacaaagctacaacaaaatcgatcccctcttgctcttgttctccccttggcttggttttctct 20262285  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 12249357 - 12249269
Alignment:
Q  12 aatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctccaaa 100  Q
    ||||||||||||||||||||| ||||| || ||||||| |||||||||||||||||||||||| |||  ||||| ||||||| ||||||    
T  12249357 aatccattttcaaccttacaaccctaactagactagatttatcatcaaacaacttgagtggtgttgttgattttcaactcttttccaaa 12249269  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 211
Target Start/End: Original strand, 32681369 - 32681460
Alignment:
Q  120 tatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatgacacttatagttttactaacctacaaatactgaaattatcttct 211  Q
    |||| |||||| |||||||||| ||||||||||| || |||||||||| || ||||| |||| || ||||||||| | || |||| ||||||    
T  32681369 tatctctttcatggaatagtcaattgtcactaaactttgaatccaatgtcagttatacttttccttacctacaaacattggaattgtcttct 32681460  T

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Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 304 - 400
Target Start/End: Complemental strand, 24594063 - 24593967
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctctgttttcctcccaaagtttcaattg 400  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||  ||||||||    
T  24594063 caattgcacaaacaaagctacagcaaaatcgttcccctcttgctcttgttctccctttggcttggttttctctgttttcctcccaaaagttcaattg 24593967  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 304 - 400
Target Start/End: Complemental strand, 24668157 - 24668061
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctctgttttcctcccaaagtttcaattg 400  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| |||||||||||||||||  ||||||||    
T  24668157 caattgcacaaacaaagctacagcaaaatcgttcccctcttgctcttgttctccctttggcttggttttttctgttttcctcccaaaagttcaattg 24668061  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 304 - 400
Target Start/End: Complemental strand, 24736752 - 24736656
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctctgttttcctcccaaagtttcaattg 400  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| |||||||||||||||||  ||||||||    
T  24736752 caattgcacaaacaaagctacagcaaaatcgttcccctcttgctcttgttctccctttggcttggttttttctgttttcctcccaaaagttcaattg 24736656  T

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Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 304 - 400
Target Start/End: Complemental strand, 24737926 - 24737830
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctctgttttcctcccaaagtttcaattg 400  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| |||||||||||||||||  ||||||||    
T  24737926 caattgcacaaacaaagctacagcaaaatcgttcccctcttgctcttgttctccctttggcttggttttttctgttttcctcccaaaagttcaattg 24737830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 304 - 400
Target Start/End: Complemental strand, 24750695 - 24750599
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctctgttttcctcccaaagtttcaattg 400  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| |||||||||||||||||  ||||||||    
T  24750695 caattgcacaaacaaagctacagcaaaatcgttcccctcttgctcttgttctccctttggcttggttttttctgttttcctcccaaaagttcaattg 24750599  T

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Target: chr5; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 9777159 - 9777231
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctct 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9777159 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctccccttggcttggttttctct 9777231  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 42124346 - 42124180
Alignment:
Q  49 tctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctccaaatttg-atgaactggaaattttatccctttcaaggaatagtcagttgtc 147  Q
    |||||| || ||| |||||||||||  |||||||||| |||||||||||||| ||  |||  || ||||| |||||||||||| |||||||||| || ||    
T  42124346 tctatcttcgaacgacttgagtggtcttgtcaattttcaactcttctccaaacttacatgt-ctagaaatgttatccctttcatggaatagtcaattatc 42124248  T
Q  148 actaaaattcgaatccaatgacacttatagttttactaacctacaaatactgaaattatcttctgtca 215  Q
     ||||| || |||||||||| || |||||||||| ||| ||||||| || || |||| ||||||||||    
T  42124247 tctaaattttgaatccaatgtcaattatagtttttctagcctacaagtattggaattgtcttctgtca 42124180  T

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Target: chr5; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 34239782 - 34239850
Alignment:
Q  17 attttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtgctgtcaatttt 85  Q
    |||||||||||| ||||||||| |||||||  |||||||||||||||||||||||||| ||||||||||    
T  34239782 attttcaaccttgcaaacctaattacactatgtctatcatcaaacaacttgagtggtgttgtcaatttt 34239850  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 41712767 - 41712833
Alignment:
Q  8 ccagaatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtg 74  Q
    |||||||| |||||||| |||| |||||||| || |||||| ||||||||||||||||| |||||||    
T  41712767 ccagaatcaattttcaaacttataaacctaactagactagacctatcatcaaacaacttcagtggtg 41712833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 41571229 - 41571306
Alignment:
Q  11 gaatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtgctgtcaattttaaa 88  Q
    ||||| ||||||||||||  |||||||| |||||||   || |||||||||||||||||||||  |||||||||||||    
T  41571229 gaatctattttcaaccttgtaaacctaactacactatgcctgtcatcaaacaacttgagtggtattgtcaattttaaa 41571306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 34232058 - 34232098
Alignment:
Q  45 tagatctatcatcaaacaacttgagtggtgctgtcaatttt 85  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  34232058 tagatctatcatcaaacaacttgagtggtgttgtcaatttt 34232098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 41445195 - 41445148
Alignment:
Q  49 tctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctc 96  Q
    |||||| ||||| ||||||||||||  |||||||||||||||||||||    
T  41445195 tctatcttcaaataacttgagtggttttgtcaattttaaactcttctc 41445148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 42129758 - 42129699
Alignment:
Q  12 aatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtg 71  Q
    |||| |||||||||||| ||||| ||| |   ||||||||||||||||||||||||||||    
T  42129758 aatctattttcaaccttgcaaacttaactttgctagatctatcatcaaacaacttgagtg 42129699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 41432384 - 41432340
Alignment:
Q  49 tctatcatcaaacaacttgagtggtgctgtcaattttaaactctt 93  Q
    |||||| ||||| ||||||||||||  ||||||||||||||||||    
T  41432384 tctatcttcaaataacttgagtggttttgtcaattttaaactctt 41432340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 23664121 - 23664049
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctct 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23664121 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctccccttggcttggttttctct 23664049  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 29797605 - 29797677
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctct 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29797605 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctccccttggcttggttttctct 29797677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 29801424 - 29801496
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctct 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29801424 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctccccttggcttggttttctct 29801496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 10895787 - 10895742
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctct 349  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||    
T  10895787 caattgcccaaacaaagctacagcaaaatcgatcctctcttgctct 10895742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 16009635 - 16009680
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctct 349  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||    
T  16009635 caattgcccaaacaaagctacagcaaaatcgatcctctcttgctct 16009680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 376
Target Start/End: Original strand, 11304281 - 11304315
Alignment:
Q  342 cttgctcttgttctgcccttggcttggttttctct 376  Q
    |||||||||||||| ||||||||||||||||||||    
T  11304281 cttgctcttgttctccccttggcttggttttctct 11304315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 2286763 - 2286691
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctct 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2286763 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctccccttggcttggttttctct 2286691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 29483427 - 29483355
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggttttctct 376  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29483427 caattgcacaaataaagctacagcaaaatcgatcccctcttgctcttgttctccccttggcttggttttctct 29483355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 25522238 - 25522397
Alignment:
Q  8 ccagaatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctccaaatttgatg 107  Q
    ||||||||||||||||| ||||||||||||| ||  |||  |||||| | |||| |||||||||||  |||||||||| ||| ||| |||||| ||        
T  25522238 ccagaatccattttcaatcttacaaacctaactaatctaattctatctttaaacgacttgagtggttttgtcaattttcaacacttttccaaacttacaa 25522337  T
Q  108 aactggaaattttatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatg 167  Q
    | ||   | |||||||||||||| |||||| ||| ||||||||||| |||||||||||||    
T  25522338 atcttcgatttttatccctttcatggaatactcaattgtcactaaacttcgaatccaatg 25522397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 25598703 - 25598747
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctc 348  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  25598703 caattgcacaaagaaagctacagcaaaatcgatcccctcttgctc 25598747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 4477916 - 4477961
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctct 349  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||    
T  4477916 caattgcccaaacaaagctacagcaaaatcgatcctctcttgctct 4477961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 25522500 - 25522539
Alignment:
Q  270 atctttccaataacaaacttagtggaagaatgcccaattg 309  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  25522500 atctttccaataacaaacttgatggaagaatgcccaattg 25522539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 14391 - 14323
Alignment:
Q  304 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctgcccttggcttggtttt 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14391 caattgcacaaacaaagctacagcaaaatcgatcccctcttgctcttgttctccccttggcttggtttt 14323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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