View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-26-LTR4-TNT-insertion-15 (Length: 611)
Name: Tnk88-26-LTR4-TNT-insertion-15
Description: Tnk88-26-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-26-LTR4-TNT-insertion-15 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 271 - 602
Target Start/End: Original strand, 31565922 - 31566240
Alignment:
| Q |
271 |
cttatcaactttcttttgctcttcaacctcaaaacccataaccatcataaattccaacaacaactgaagctgtttctttctgaggtttctgttactttct |
370 |
Q |
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| T |
31565922 |
cttatcaactttcttttgctcttcaacctcaaaacccataaccatcataaattccaacaacaactgaagctgtttctttctgaggtttctgttactttct |
31566021 |
T |
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| Q |
371 |
cacctcctccagcgctttctcaaagacttgctgccactcttttcgacgataaagacatcgaatttgattgacttaaggtaattcctgaaataggttttca |
470 |
Q |
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| T |
31566022 |
cacctcctccagcgctttctcaaagacttgctgccactcttttcgacgataaagacatcgaatttgatcgacttaagataattcctgaaataggttttca |
31566121 |
T |
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| Q |
471 |
cgaatttgtgtttttgttaatgggtttttgtcaaataactgttcttgcttatttagaatttttgtttgtgttggaactaaatgagtcggttcctttttgt |
570 |
Q |
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| T |
31566122 |
cgaatttgtgt-------------tttttgtcaaataactgttcttgcttatttagaatttttgtttgtgttggaactaaatgagtcggttcctttttgt |
31566208 |
T |
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| Q |
571 |
ttgtatattccaatatagttctttaacaattg |
602 |
Q |
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| T |
31566209 |
ttgtatattccaatatagttctttaacaattg |
31566240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 111 - 274
Target Start/End: Original strand, 31565718 - 31565883
Alignment:
| Q |
111 |
ttcatattcataaagagcttacagaaggtgccaattatgagtgt--taatgaatatggtagaatgtttcaatttatgggtataaaaaataacacaattat |
208 |
Q |
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| T |
31565718 |
ttcatattcataaagagcttacaaaaggtgccaattatgagtgtgttaatgaatatggtagaatgtttcaatttatggatataaaaaataacacaattat |
31565817 |
T |
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| Q |
209 |
tggtaccttttcttcatctttggggatgaaatgacgaaagtgcccttacttttcctcaacccctta |
274 |
Q |
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| T |
31565818 |
tggcaccttttcttcatctttgggaatgaaatgacgaaagtgcccttacttttcctcaacccctta |
31565883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 31565645 - 31565719
Alignment:
| Q |
10 |
aacatgagttttgcttccgtgttcatagagcttgattgtaagcaagtggataaatggctccttttgtaagctctt |
84 |
Q |
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| T |
31565645 |
aacatgagttttgcttccgtgttcatagagcttgattgtaagcaagtggataaatggcaccttttgtaagctctt |
31565719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 366 - 485
Target Start/End: Complemental strand, 11662909 - 11662784
Alignment:
| Q |
366 |
tttctcacctcctccagcgctttctcaaagacttgctgccactcttttcgac------gataaagacatcgaatttgattgacttaaggtaattcctgaa |
459 |
Q |
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|||||||||||||| || |||||||||||||| |||| | ||||||||||| ||||||||||| |||||||| || |||||||||||| |||| |
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| T |
11662909 |
tttctcacctcctcgagagctttctcaaagacctgctcctactcttttcgatactcatgataaagacattgaatttgagcgatttaaggtaattcttgaa |
11662810 |
T |
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| Q |
460 |
ataggttttcacgaatttgtgttttt |
485 |
Q |
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| T |
11662809 |
atcggttttgattaatttgtgttttt |
11662784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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