View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk88-26-LTR4-TNT-insertion-2 (Length: 395)

Name: Tnk88-26-LTR4-TNT-insertion-2
Description: Tnk88-26-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk88-26-LTR4-TNT-insertion-2
Tnk88-26-LTR4-TNT-insertion-2
[»] chr4 (1 HSPs)
chr4 (11-385)||(11118651-11119025)
[»] chr5 (9 HSPs)
chr5 (51-379)||(42124018-42124346)
chr5 (19-87)||(34239782-34239850)
chr5 (13-90)||(41571229-41571306)
chr5 (11-76)||(41712768-41712833)
chr5 (47-87)||(34232058-34232098)
chr5 (51-98)||(41445148-41445195)
chr5 (14-73)||(42129699-42129758)
chr5 (336-374)||(34240084-34240122)
chr5 (51-95)||(41432340-41432384)
[»] chr3 (1 HSPs)
chr3 (11-86)||(8523841-8523916)
[»] chr2 (2 HSPs)
chr2 (14-102)||(12249269-12249357)
chr2 (122-213)||(32681369-32681460)
[»] chr6 (2 HSPs)
chr6 (11-169)||(25522239-25522397)
chr6 (272-314)||(25522500-25522542)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 385
Target Start/End: Complemental strand, 11119025 - 11118651
Alignment:
Q  11 cagaatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctccaaatttgatga 110  Q
    |||||| |||||||| ||| ||||| ||| ||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  11119025 cagaatgcattttcagcctaacaaagctagatgaactagatctatcatcaaacaacttgagtggtgttgtcaattttaaactcttctccaaatttgctga 11118926  T
Q  111 actggaaattttatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatgacacttatagttttactaacctacaaatactgaaattatct 210  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  11118925 cctggaaattttatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatgtcacttatagttttactaacctacaaatactcaaattatct 11118826  T
Q  211 tctgtcatattgattgagtttcacaacttacaaggagatttcccacgtttgcaacatctgcatctttccaataacaaacttagtggaagaatgcccaatt 310  Q
    |||||||  ||||| || |||||||||||||||||||| || ||| |||||  ||||||| |||||||||| |||||||||| |||||||||||||||||    
T  11118825 tctgtcaacttgatcgaatttcacaacttacaaggagaatttccaagtttgtcacatctggatctttccaaaaacaaacttaatggaagaatgcccaatt 11118726  T
Q  311 ggttcgcaggaaataatttttggcaatctttggacctctctcaaaacttgttcacgtcaatagatcaatttatta 385  Q
    ||||    ||||||| || |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  11118725 ggtttcttggaaatatttattggcaatctgtggacctctctcataacttgttcacgtcaatagatcaatttatta 11118651  T

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Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 51 - 379
Target Start/End: Complemental strand, 42124346 - 42124018
Alignment:
Q  51 tctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctccaaatttg-atgaactggaaattttatccctttcaaggaatagtcagttgtc 149  Q
    |||||| || ||| |||||||||||  |||||||||| |||||||||||||| ||  |||  || ||||| |||||||||||| |||||||||| || ||    
T  42124346 tctatcttcgaacgacttgagtggtcttgtcaattttcaactcttctccaaacttacatgt-ctagaaatgttatccctttcatggaatagtcaattatc 42124248  T
Q  150 actaaaattcgaatccaatgacacttatagttttactaacctacaaatactgaaattatcttctgtcatattgattgagtttcacaacttacaaggagat 249  Q
     ||||| || |||||||||| || |||||||||| ||| ||||||| || || |||| ||||||||||  |||||  | || || || |||||||||||     
T  42124247 tctaaattttgaatccaatgtcaattatagtttttctagcctacaagtattggaattgtcttctgtcaatttgatcaaattccataatttacaaggagaa 42124148  T
Q  250 ttcccacgtttgcaacatctgcatctttccaataacaaacttagtggaagaatgcccaattggttcgcaggaaataatttttggcaatctttggacctct 349  Q
    |||  |  ||||  |   ||  || ||||  |||||||||||  |||||||||||||||||||||    | ||| ||||  | || || |||| ||||||    
T  42124147 ttcttagatttgatatcacttgatatttctgataacaaacttcatggaagaatgcccaattggttacttgaaaaaaattcattgctatttttgaacctct 42124048  T
Q  350 ctcaaaacttgttcacgtcaatagatcaat 379  Q
    ||||||||||||||||||||||||||||||    
T  42124047 ctcaaaacttgttcacgtcaatagatcaat 42124018  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 34239782 - 34239850
Alignment:
Q  19 attttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtgctgtcaatttt 87  Q
    |||||||||||| ||||||||| |||||||  |||||||||||||||||||||||||| ||||||||||    
T  34239782 attttcaaccttgcaaacctaattacactatgtctatcatcaaacaacttgagtggtgttgtcaatttt 34239850  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 41571229 - 41571306
Alignment:
Q  13 gaatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtgctgtcaattttaaa 90  Q
    ||||| ||||||||||||  |||||||| |||||||   || |||||||||||||||||||||  |||||||||||||    
T  41571229 gaatctattttcaaccttgtaaacctaactacactatgcctgtcatcaaacaacttgagtggtattgtcaattttaaa 41571306  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 41712768 - 41712833
Alignment:
Q  11 cagaatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtg 76  Q
    ||||||| |||||||| |||| |||||||| || |||||| ||||||||||||||||| |||||||    
T  41712768 cagaatcaattttcaaacttataaacctaactagactagacctatcatcaaacaacttcagtggtg 41712833  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 34232058 - 34232098
Alignment:
Q  47 tagatctatcatcaaacaacttgagtggtgctgtcaatttt 87  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  34232058 tagatctatcatcaaacaacttgagtggtgttgtcaatttt 34232098  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 41445195 - 41445148
Alignment:
Q  51 tctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctc 98  Q
    |||||| ||||| ||||||||||||  |||||||||||||||||||||    
T  41445195 tctatcttcaaataacttgagtggttttgtcaattttaaactcttctc 41445148  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 42129758 - 42129699
Alignment:
Q  14 aatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtg 73  Q
    |||| |||||||||||| ||||| ||| |   ||||||||||||||||||||||||||||    
T  42129758 aatctattttcaaccttgcaaacttaactttgctagatctatcatcaaacaacttgagtg 42129699  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 374
Target Start/End: Original strand, 34240084 - 34240122
Alignment:
Q  336 atctttggacctctctcaaaacttgttcacgtcaataga 374  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  34240084 atctttgaacctctctcaaaacttgttcacatcaataga 34240122  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 41432384 - 41432340
Alignment:
Q  51 tctatcatcaaacaacttgagtggtgctgtcaattttaaactctt 95  Q
    |||||| ||||| ||||||||||||  ||||||||||||||||||    
T  41432384 tctatcttcaaataacttgagtggttttgtcaattttaaactctt 41432340  T

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Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 8523916 - 8523841
Alignment:
Q  11 cagaatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtgctgtcaattt 86  Q
    |||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||| |||||||||    
T  8523916 cagaatccattttcaaccttgcaaacctaagtagactagatctatcatcaaacaacttgagtggtgttgtcaattt 8523841  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 12249357 - 12249269
Alignment:
Q  14 aatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctccaaa 102  Q
    ||||||||||||||||||||| ||||| || ||||||| |||||||||||||||||||||||| |||  ||||| ||||||| ||||||    
T  12249357 aatccattttcaaccttacaaccctaactagactagatttatcatcaaacaacttgagtggtgttgttgattttcaactcttttccaaa 12249269  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 32681369 - 32681460
Alignment:
Q  122 tatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatgacacttatagttttactaacctacaaatactgaaattatcttct 213  Q
    |||| |||||| |||||||||| ||||||||||| || |||||||||| || ||||| |||| || ||||||||| | || |||| ||||||    
T  32681369 tatctctttcatggaatagtcaattgtcactaaactttgaatccaatgtcagttatacttttccttacctacaaacattggaattgtcttct 32681460  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 25522239 - 25522397
Alignment:
Q  11 cagaatccattttcaaccttacaaacctaaatacactagatctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctccaaatttgatga 110  Q
    |||||||||||||||| ||||||||||||| ||  |||  |||||| | |||| |||||||||||  |||||||||| ||| ||| |||||| ||    |    
T  25522239 cagaatccattttcaatcttacaaacctaactaatctaattctatctttaaacgacttgagtggttttgtcaattttcaacacttttccaaacttacaaa 25522338  T
Q  111 actggaaattttatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatg 169  Q
     ||   | |||||||||||||| |||||| ||| ||||||||||| |||||||||||||    
T  25522339 tcttcgatttttatccctttcatggaatactcaattgtcactaaacttcgaatccaatg 25522397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 25522500 - 25522542
Alignment:
Q  272 atctttccaataacaaacttagtggaagaatgcccaattggtt 314  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  25522500 atctttccaataacaaacttgatggaagaatgcccaattggtt 25522542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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