View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-26-LTR4-TNT-insertion-4 (Length: 393)
Name: Tnk88-26-LTR4-TNT-insertion-4
Description: Tnk88-26-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-26-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 43 - 385
Target Start/End: Complemental strand, 26967457 - 26967114
Alignment:
| Q |
43 |
aattaatctctaattctt-acatctttaaaatttagcaacagaattagagacgagattcatacttttcggtcgttagaagtatatgtatttttcttttac |
141 |
Q |
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| T |
26967457 |
aattaatctctatttctttacatctttaaaatttagcaatagaattagagacgaaattcatgtttttcagtcgttagaagtatatgtatttttctcttac |
26967358 |
T |
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| Q |
142 |
tttggttaaatagtttaaattcaattctttgacacatgtttcaaacttttatgtataccaacagggatggagtatggtgaaagcagaaaactcttcttca |
241 |
Q |
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| T |
26967357 |
tttggttaactagtttaaattcaattctttgacacatgcttcaaacttttatgtataccaatagggatggagtatggtgaaagcagaaaactcttcttca |
26967258 |
T |
|
| Q |
242 |
atgcaaagtttcacaccagagagtaattctactagtgaacaaaataactacaacaagagtggttcacaatcaaattacaacaattatcaatcacagccac |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26967257 |
atgcaaagtttcacaccagagagtaattctactagtgaacaaaataactacaacaagagtggttcacaatcaaattacaacaattatcaatcacaaccac |
26967158 |
T |
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| Q |
342 |
aagttcagatccttagtagaagatcagatgatggatacaattgg |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26967157 |
aagttcagatccttagtagaagatcagatgatggatacaattgg |
26967114 |
T |
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