View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-26-LTR4-TNT-insertion-6 (Length: 188)
Name: Tnk88-26-LTR4-TNT-insertion-6
Description: Tnk88-26-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-26-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 3e-65; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 12 - 149
Target Start/End: Original strand, 29723503 - 29723640
Alignment:
| Q |
12 |
gatggtgtgctaaaatgtcttacaacttagtattgaggggaggaggtgcttacaacttcgtttttgttttgaaggaaggaagaacatcaattctattata |
111 |
Q |
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| T |
29723503 |
gatggtgtgctaaaatgtcttacaacttagtattgaggggagggggtgcttacaacttcgtttttgttttgaaggaaggaagaacgtcaattctattata |
29723602 |
T |
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| Q |
112 |
gttgaaggttagtttgttcacgaagatgtggtgtgcta |
149 |
Q |
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| T |
29723603 |
gttgaagattagtttgttcacgaagatgtggtgtgcta |
29723640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 41235956 - 41236091
Alignment:
| Q |
27 |
tgtcttacaacttagtattgaggggaggaggtgcttacaacttcgtttttgttttgaaggaaggaa--------------gaacatcaattctattatag |
112 |
Q |
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| T |
41235956 |
tgtcttacaacttagtattgaggggaagat-tgattacaacttaggttttgttttgaaggaaggaaacttagtattaatagaacgtcaattctattatag |
41236054 |
T |
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| Q |
113 |
ttgaaggttagtttgttcacgaagatgtggtgtgcta |
149 |
Q |
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| T |
41236055 |
tttaaggttagtttgttcacgaagatattgtgtgcta |
41236091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 41235716 - 41235636
Alignment:
| Q |
12 |
gatggtgtgctaaaatgtcttacaacttagtattgaggggaggaggtgcttacaacttcgtttttgttttgaaggaaggaa |
92 |
Q |
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| T |
41235716 |
gatggtgtgcaaaagtgtcttaaaacttaatattgaggggagtgggtgattacaacttaggttttgttttgaaggaaggaa |
41235636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 24536829 - 24536797
Alignment:
| Q |
107 |
ttatagttgaaggttagtttgttcacgaagatg |
139 |
Q |
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| T |
24536829 |
ttatagttgaaggttagtttgttcatgaagatg |
24536797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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